go-prepare-release.pl
go-prepare-release.pl -f mygo.conf
Builds a GO database from various flat file components
It will build 4 databases in order, each database subsumes the previous one. Two mysqldumps will be generated for each db
You need both go-perl and go-db-perl installed
A db containing only the ontology
required files:
$GO/ontology/*.obo $GO/ontology/GO.defs $GO/ontology/external2go/*
A CVS update will be performed to get the correct files for the release
extra files generated:
rdf-xml coderelease
A db subsuming termdb that contains the gene associations
required files:
$GO/gene-associations/*
A db subsuming assocdb that includes some sequence data
required files:
$GO/gp2protein/* ./proteomes/*SPC
The proteomes dir is automatically downloaded from EBI
ftp://ftp.ebi.ac.uk/pub/databases/SPproteomes/swissprot_files/proteomes
The same as seqdb but with the IEA associations removed
extra files generated:
fasta rdf-xml
interactive mode
make a monthly release
will cvs check out from the 1st of the month and build a release corresponding to that date
make a daily release
