NAME

Bio::DB::DBI::mysql - DESCRIPTION of Object

SYNOPSIS

Give standard usage here

DESCRIPTION

Describe the object here

FEEDBACK

Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.

  bioperl-l@bioperl.org                  - General discussion
  http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

Support

Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:

  http://redmine.open-bio.org/projects/bioperl/

AUTHOR - Hilmar Lapp

Email hlapp at gmx.net

Describe contact details here

CONTRIBUTORS

Additional contributors names and emails here

APPENDIX

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

new

 Title   : new
 Usage   : my $obj = Bio::DB::DBI::mysql->new();
 Function: Builds a new Bio::DB::DBI::mysql object using the passed named 
           parameters.
 Returns : an instance of Bio::DB::DBI::mysql
 Args    : named parameters with tags -dbcontext (a Bio::DB::DBContextI
           implementing object) and -sequence_name (the name of the sequence
           for PK generation)

next_id_value

 Title   : next_id_value
 Usage   : $pk = $obj->next_id_value("bioentry");
 Function: This implementation uses standard MySQL only and hence cannot
           implement this method. It will throw an exception if called.
 Example :
 Returns : a value suitable for use as a primary key
 Args    : The database connection handle to use for retrieving the next primary
           key value.
           Optionally, the name of the table. The driver is not required to
           honor the argument if present.

last_id_value

 Title   : last_id_value
 Usage   :
 Function: Returns the last unique primary key value
           allocated. Depending on the argument and the driver, the
           value may be specific to a table, or independent of the
           table.

           This implementation will ignore the table.
 Example :
 Returns : a value suitable for use as a primary key
 Args    : The database connection handle to use for retrieving the primary
           key from the last insert.

ifnull_sqlfunc

 Title   : nvl_sqlfunc
 Usage   :
 Function: Get the name of the SQL function that takes two arguments
           and returns the first if it is not null, and the second
           otherwise.

           Most RDBMSs will have such a function, but unfortunately
           the naming is different between them. E.g., in MySQL the
           name is IFNULL(), whereas in Oracle it is NVL().

 Example :
 Returns : the name of the function as a string, without parentheses
 Args    : none

cpanm Bio::BioEntry

perl -MCPAN -e shell
install Bio::BioEntry