Bio::PopGen::IndividualI - An individual who has Genotype or Sequence Results
# Get a Bio::PopGen::IndividualI somehow # test if it has alleles/genotypes for a given marker if( $ind->has_marker($markername) ) { } # get the unique id print $ind->unique_id, "\n"; # get the number of results (genotypes) print $ind->num_results;
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The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : unique_id Usage : my $id = $individual->unique_id Function: Unique Identifier Returns : string representing unique identifier Args : string
Title : num_genotypes Usage : my $count = $person->num_results; Function: returns the count of the number of Results for a person Returns : integer Args : none
Title : get_Genotypes Usage : my @genotypes = $ind->get_Genotypes(-marker => $markername); Function: Get the genotypes for an individual, based on a criteria Returns : Array of genotypes Args : either none (return all genotypes) or -marker => name of marker to return (exact match, case matters)
Title : has_Marker Usage : if( $ind->has_Marker($name) ) {} Function: Boolean test to see if an Individual has a genotype for a specific marker Returns : Boolean (true or false) Args : String representing a marker name
Title : get_marker_names Usage : my @names = $individual->get_marker_names; Function: Returns the list of known marker names Returns : List of strings Args : none
To install Bio::Seq, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::Seq
CPAN shell
perl -MCPAN -e shell install Bio::Seq
For more information on module installation, please visit the detailed CPAN module installation guide.