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NAME

Bio::VertRes::Config::Recipes::BacteriaRnaSeqExpressionUsingBwa - Standard snp calling pipeline for bacteria

VERSION

version 1.133090

SYNOPSIS

RNA seq expression with Bwa use Bio::VertRes::Config::Recipes::BacteriaRnaSeqExpressionUsingBwa;

   my $obj = Bio::VertRes::Config::Recipes::BacteriaRnaSeqExpressionUsingBwa->new( 
     database => 'abc', 
     limits => {project => ['Study ABC']}, 
     reference => 'ABC', 
     reference_lookup_file => '/path/to/refs.index',
     );
   $obj->create;

AUTHOR

Andrew J. Page <ap13@sanger.ac.uk>

COPYRIGHT AND LICENSE

This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.

This is free software, licensed under:

  The GNU General Public License, Version 3, June 2007