NAME
BioGraph::Visual
SYNOPSIS
use BioGraph::Visual;
DESCRIPTION
Package for manipulate graphs represented as well as adjacent matrix or adjacent list. Library for visualize graphs in different format (txt, pdf, ps, 3d, ...).
AVAILABLE FUNCTIONS
This is the list of the differents functions implemented in this library.
- export
-
Export the graph in a file image format. To use this function you MUST have installed the 'dot' program from AT&T (http://www.research.att.com/sw/tools/graphviz).
SYNOPSIS export(representation, file_name, format, graph)
PARAMETERS
- representation
-
the type of representation choosen : 1 = adjacent matrix, and 2 = adjacent list
- file_name
-
the basename of the output file (ex: graph => graph.dot)
- format
-
one type of format in : ps, gif, jpeg, fig, xdot
- graph
-
the hash table of the graph
OUTPUT Nothing else the converted file
- display
-
This function display on the screen (as text) a graph contained in a hash table
SYNOPSIS display(representation, graph)
PARAMETERS
- representation
-
the type of representation choosen : 1 = adjacent matrix, and 2 = adjacent list
- graph
-
the hash table of the graph
OUTPUT Nothing else the graph on the screen
- generate_3D
-
Generate the representation in 3 dimensions of the vertices densities of a graph (pdf file). You MUST have installed the R package to use this function (http://www.R-project.org).
SYNOPSIS generate_3D(file_name, representation, ref_densities, graph)
PARAMETERS
- file_name
-
the name of the file to produce without extension
- representation
-
the type of representation choosen : 1 = adjacent matrix, and 2 = adjacent list
- ref_densities
-
the reference of the hash table of densities
- graph
-
the hash table of the graph
OUTPUT The 3D graph in pdf format
AUTHOR AND COPYRIGHT
BioGraph::Visual is Copyright (C) 2004, Tristan Colombo
CNRS - LCB, 31 chemin Joseph Aiguier
13009 Marseille
France
Email: tristan.colombo@ibsm.cnrs-mrs.fr
All rights reserved.
You may distribute this package under the terms of the GNU
General Public License.