Search results for "AMACKEY"
Aaron J. Mackey (AMACKEY)
DBIx::Tree - Generate a tree from a self-referential database table
When you've got one of those nasty self-referential tables that you want to bust out into a tree, this is the module to check out. Assuming there are no horribly broken nodes in your tree and (heaven forbid) any circular references, this module will ...
RSAVAGE/DBIx-Tree-1.98 - 02 Feb 2021 05:04:41 UTC - Search in distribution
Bio::Seq::Meta - Generic superclass for sequence objects with residue-based meta information
This class implements generic methods for sequences with residue-based meta information. Meta sequences with meta data are Bio::LocatableSeq objects with additional methods to store that meta information. See Bio::LocatableSeq and Bio::Seq::MetaI. Th...
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC - Search in distribution- Bio::Seq::MetaI - Interface for sequence objects with residue-based meta information
- Bio::Tree::Tree - An implementation of the TreeI interface.
- Bio::Tree::Node - A Simple Tree Node
- 13 more results from BioPerl »
Data::Encrypted - Transparently store encrypted data via RSA
Often when dealing with external resources (database engines, ftp, telnet, websites, etc), your Perl script must supply a password, or other sensitive data, to the other system. This requires you to either continually prompt the user for the data, or...
AMACKEY/Data-Encrypted-0.07 - 05 Dec 2001 21:13:36 UTC - Search in distribution
Bio::DB::GenBank - Database object interface to GenBank
Allows the dynamic retrieval of Bio::Seq sequence objects from the GenBank database at NCBI, via an Entrez query. WARNING: Please do NOT spam the Entrez web server with multiple requests. NCBI offers Batch Entrez for this purpose. Note that when quer...
CJFIELDS/Bio-DB-NCBIHelper-1.7.8 - 15 Dec 2023 04:25:18 UTC - Search in distribution- Bio::DB::GenPept - Database object interface to GenPept
FAST::Bio::Seq::Meta - Generic superclass for sequence objects with residue-based meta information
This class implements generic methods for sequences with residue-based meta information. Meta sequences with meta data are FAST::Bio::LocatableSeq objects with additional methods to store that meta information. See FAST::Bio::LocatableSeq and FAST::B...
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC - Search in distribution- FAST::Bio::Seq::MetaI - Interface for sequence objects with residue-based meta information
- FAST::Bio::Search::Hit::HitI - Interface for a hit in a similarity search result
- FAST::Bio::Tree::Node - A Simple Tree Node
- 14 more results from FAST »
Bio::Tools::Phylo::PAML::Result - A PAML result set object
This is a container object for PAML Results....
CDRAUG/Bio-Tools-Phylo-PAML-1.7.3 - 01 Jul 2018 12:36:38 UTC - Search in distribution- Bio::Tools::Phylo::PAML - Parses output from the PAML programs codeml, baseml, basemlg, codemlsites and yn00
- Bio::Tools::Phylo::PAML::Codeml - Parses output from the PAML program codeml
Class::Tangram::Generator - Generate Class::Tangram-based objects at runtime.
The purpose of Class::Tangram::Generator is to facilitate the rapid development of Class::Tangram-based objects in the Tangram framework. Instead of having to write class modules for all your Tangram objects, many of which only inherit from Class::Ta...
SAMV/Class-Tangram-1.57 - 30 Jan 2006 21:29:06 UTC - Search in distribution
Regexp::DeferredExecution - Defer execution of (?{}) codeblocks until the end of a successful match
The Perl regular expression engine provides a special embedded pattern, "(?{ <code> })", that immediately executes "<code>" if and when the pattern is used during the matching process. In the SYNOPSIS example, the initial "foo" subpattern is initiall...
AMACKEY/Regexp-DeferredExecution-0.05 - 17 Jan 2004 14:49:31 UTC - Search in distribution
Bio::Graphics::Glyph::ragged_ends - The "ragged ends" glyph
This is identical to the "box" glyph except that it will draw the subparts of features that contain subfeatures. The subparts are not connected -- use the "segments" glyph for that. "Generic" is the default glyph used when not otherwise specified. OP...
CJFIELDS/Bio-Graphics-2.40 - 16 Dec 2016 04:50:36 UTC - Search in distribution
Bio::Graphics::Browser2::Plugin::ProteinDumper - A plugin for dumping translated protein sequences in various formats
This is a plugin to the Generic Model Organism Database browse used by Bio::Graphics::Browser to dump protein translations of genes from an annotated region in the requested flatfile format. Currently the feature formats are...
LDS/GBrowse-2.56 - 15 Jan 2017 21:29:11 UTC - Search in distribution