Bio::DB::HTS - Read files using HTSlib including BAM/CRAM, Tabix and BCF database files

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This module provides a Perl interface to the HTSlib library for indexed and unindexed SAM/BAM/CRAM sequence alignment databases. It provides support for retrieving information on individual alignments, read pairs, and alignment coverage information a...

AVULLO/Bio-DB-HTS-3.01 - 23 Apr 2019 13:51:11 UTC - Search in distribution

• Bio::DB::HTS::VCF - Read VCF/BCF data files
• Bio::DB::HTS::VCF::Iterator - XS module wrapping around a hts_itr_t

AVLTree - Perl extension for efficient creation and manipulation of AVL balanced binary trees.

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This module provides a simple and fast implementation of AVL balanced binary trees. It uses the Perl XS extension mechanism by providing a tiny wrapper around an efficient C library which does the core of the work. Preliminary benchmarking shows this...

AVULLO/AVLTree-0.1.7 - 04 Mar 2018 11:33:12 UTC - Search in distribution

Tree::Interval::Fast - Perl extension for efficient creation and manipulation of interval trees.

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This module provides a simple and fast implementation of interval trees. It uses the Perl XS extension mechanism by providing a tiny wrapper around an efficient C library which does the core of the work....

AVULLO/Tree-Interval-Fast-0.0.1 - 27 Apr 2018 08:40:15 UTC - Search in distribution

• Tree::Interval::Fast::Interval - Represents an interval in an instance of Tree::Interval::Fast