Search results for "GENE"
Gene Boggs (GENE)
Gene Gallistel (GRAVALO)
Gene Spafford (GSPAF)
Gene Cutler (GENECUT)
Gene Sullivan (GSULLIVAN)
Gene Cutler (GENEPERL)
Gene Selkov, Jr. (SELKOVJR)
GOBO::Gene
An GOBO::Node that corresponds to a specific SO:gene In GO, genes are the subject of GOBO::Annotation statements TBD This should really be in bioperl. Modeled as nodes as they can be elements in a graph. cf Chado...
CMUNGALL/GOBO-0.03 - 17 Aug 2009 18:03:10 UTC - Search in distribution- GOBO/DBIC/GODBModel/Schema/GeneProduct.pm
- GOBO::Doc::FAQ - Frequently Asked Questions
- go-gaf-inference.pl
- 5 more results from GOBO »
GenOO::Gene - Gene object
GenOO::Gene describes a gene. A gene is defined as a genomic region (it has the strand, chromosome, start and stop attributes required by GenOO::GenomicRegion) as well as collection of GenOO::Transcript objects. The genomic location attributes can be...
MNSMAR/GenOO-1.5.2 - 06 May 2020 21:51:14 UTC - Search in distribution- GenOO::GeneCollection::Factory - Factory for creating GenOO::RegionCollection objects
- GenOO - A Modern Perl Framework for High Throughput Sequencing analysis
- GenOO::TranscriptCollection::Factory::FromGeneCollection - Factory to create GenOO::TranscriptCollection object from a GeneCollection
lib/Peptide/Gene.pm
SHTATLAND/Peptide-Pubmed-1.02
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26 Jul 2007 04:55:44 UTC
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- Peptide::Pubmed - extract peptide sequences from MEDLINE article abstracts.
AI::Gene::Simple
This is a class which provides generic methods for the creation and mutation of genetic sequences. Various mutations are provided but the resulting mutations are not checked for a correct syntax. These classes are suitable for genes where it is only ...
AJGOUGH/AI-Gene-Sequence-0.22 - 10 May 2011 03:41:28 UTC - Search in distribution- AI::Gene::Sequence
- Regexgene - An example of a AI::Gene::Sequence
- demo/Musicgene.pm
Ace::Sequence::Gene - Simple "Gene" Object
Ace::Sequence::Gene is a subclass of Ace::Sequence::Feature. It inherits all the methods of Ace::Sequence::Feature, but adds the ability to retrieve the annotated introns and exons of the gene....
LDS/AcePerl-1.92 - 11 Nov 2008 16:47:31 UTC - Search in distribution- Ace/Browser/GeneSubs.pm
- Ace - Object-Oriented Access to ACEDB Databases
- Ace::Sequence - Examine ACeDB Sequence Objects
- 5 more results from AcePerl »
AI::FANN::Evolving::Gene - gene that codes for an artificial neural network (ANN)
RVOSA/AI-FANN-Evolving-0.4
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04 Jun 2014 22:42:31 UTC
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- aivolver - Evolves optimal artificial neural networks
SemanticWeb::Schema::Gene - A discrete unit of inheritance which affects one or more biological traits (Source: [https://en
A discrete unit of inheritance which affects one or more biological traits (Source: [https://en.wikipedia.org/wiki/Gene](https://en.wikipedia.org/wiki/Gene) ). Examples include FOXP2 (Forkhead box protein P2), SCARNA21 (small Cajal body-specific RNA ...
RRWO/SemanticWeb-Schema-v23.0.0 - 27 Oct 2023 12:04:42 UTC - Search in distribution
Bio::Graphics::Glyph::gene - A GFF3-compatible gene glyph
This glyph is used for drawing genes that may have alternatively-spliced transcripts. The various isoforms are stacked on top of each other and given a single label and description that apply to the entire stack. Each individual transcript's name is ...
CJFIELDS/Bio-Graphics-2.40 - 16 Dec 2016 04:50:36 UTC - Search in distribution- Bio::Graphics::Glyph::rainbow_gene - A GFF3-compatible gene glyph
- frend.pl - Render a Bio::Graphics Feature File on the web
- Bio::Graphics::Glyph - Base class for Bio::Graphics::Glyph objects
- 8 more results from Bio-Graphics »
Bio::SeqFeature::Gene::UTR - A feature representing an untranslated region that is part of a transcriptional unit
A UTR is a Bio::SeqFeature::Gene::ExonI compliant object that is non-coding, and can be either 5' or 3' in a transcript....
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC - Search in distribution- Bio::SeqFeature::Gene::Exon - a feature representing an exon
- Bio::Tools::Prediction::Gene - a predicted gene structure feature
- Bio::SeqFeature::Gene::ExonI - Interface for a feature representing an exon
- 61 more results from BioPerl »
Bio::Palantir::Parser::Gene - BiosynML DTD-derived internal class
# TODO...
LMEUNIER/Bio-Palantir-0.211420 - 22 May 2021 20:37:07 UTC - Search in distribution- Bio::Palantir::Refiner::GenePlus - Refiner internal class for handling GenePlus objects
- Bio::Palantir::Explorer::GeneFasta - Explorer internal class for handling GeneFasta objects
- Manual
- 15 more results from Bio-Palantir »
Algorithm::Genetic::Diploid::Gene - a gene with an expressible function
RVOSA/Algorithm-Genetic-Diploid-0.3
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04 Jun 2014 22:41:04 UTC
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- Algorithm::Genetic::Diploid::Factory - creator of objects
Bio::DB::GFF::Aggregator::gene - Sequence Ontology Geene
Bio::DB::GFF::Aggregator::gene is identical to so_transcript, but is used in those cases where you would like the name of the aggregated feature to be "gene" rather than "processed_transcript". It aggregates raw "exon," "CDS", "five_prime_UTR", "thre...
CJFIELDS/Bio-DB-GFF-1.7.4 - 08 Jan 2020 20:41:58 UTC - Search in distribution- Bio::DB::GFF - Storage and retrieval of sequence annotation data
- Bio::DB::GFF::Feature - A relative segment identified by a feature type
- Bio::DB::GFF::RelSegment - Sequence segment with relative coordinate support
- 7 more results from Bio-DB-GFF »
FAST::Bio::SeqFeature::Gene::UTR - A feature representing an untranslated region that is part of a transcriptional unit
A UTR is a FAST::Bio::SeqFeature::Gene::ExonI compliant object that is non-coding, and can be either 5' or 3' in a transcript....
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC - Search in distribution- FAST::Bio::SeqFeature::Gene::Exon - a feature representing an exon
- FAST::Bio::SeqFeature::Gene::ExonI - Interface for a feature representing an exon
- FAST::Bio::SeqFeature::Gene::Intron - An intron feature
- 37 more results from FAST »
Microarray::Explorer - class for viewing clustered expression data over the web
SHERLOCK/Microarray-GeneXplorer-0.11
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15 Jul 2004 23:59:11 UTC
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- Microarray::CdtDataset - an abstraction to the files produced from clustering
- Microarray::DataMatrix - abstraction to matrices of microarray data
- lib/Microarray/Utilities/Filesystem.pm
- 8 more results from Microarray-GeneXplorer »
TAIR::GeneDescriptions - Automatically download gene descriptions using locus identifiers (AGI codes) or gene names.
HSUREN/TAIR-GeneDescriptions-1.00
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04 Apr 2011 13:09:01 UTC
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Bio::ASN1::Sequence - Regular expression-based Perl Parser for ASN.1-formatted NCBI Sequences.
Bio::ASN1::Sequence is a regular expression-based Perl Parser for ASN.1-formatted NCBI sequences. It parses an ASN.1-formatted sequence record and returns a data structure that contains all data items from the sequence record. The parser will report ...
CJFIELDS/Bio-ASN1-EntrezGene-1.73 - 25 Sep 2018 02:32:11 UTC - Search in distribution- Bio::ASN1::EntrezGene - Regular expression-based Perl Parser for NCBI Entrez Gene.
- Bio::SeqIO::entrezgene - Entrez Gene ASN1 parser
- Bio::ASN1::Sequence::Indexer - Indexes NCBI Sequence files.
- 1 more result from Bio-ASN1-EntrezGene »
GO::AnnotatedGene
The GO::AnnotatedGene package allows creation of objects that contains the details of a gene as determined from a gene_associations file. Typically these objects will contain the following information: Column Cardinality Contents ------ ----------- -...
SHERLOCK/GO-TermFinder-0.86 - 19 Nov 2009 17:39:14 UTC - Search in distribution- GO::Node - provides information about a node in the Gene Ontology
- GO::View - Creates a gif or png image for visualizing the GO DAG
- GO::TermFinder - identify GO nodes that annotate a group of genes with a significant p-value
- 3 more results from GO-TermFinder »
Bio::DB::EntrezGene - Database object interface to Entrez Gene
Allows the dynamic retrieval of Sequence objects from the Entrez Gene database at NCBI, via an Entrez query using Gene ids. This module requires the CPAN Bio::ASN1 module. WARNING: Please do NOT spam the Entrez web server with multiple requests. NCBI...
CJFIELDS/Bio-DB-NCBIHelper-1.7.8 - 15 Dec 2023 04:25:18 UTC - Search in distribution
Bio::Cluster::UniGene - UniGene object
This UniGene object implements the Bio::Cluster::UniGeneI interface for the representation if UniGene clusters in Bioperl. It is returned by the Bio::ClusterIO parser for unigene format and contains all the data associated with one UniGene record. Th...
CJFIELDS/Bio-Cluster-1.7.3 - 01 Oct 2018 04:35:53 UTC - Search in distribution- Bio::Cluster::UniGeneI - abstract interface of UniGene object