Search results for "MAF"
Mark Flickinger (MAF)
Bio::AlignIO::maf - Multiple Alignment Format sequence input stream
This class constructs Bio::SimpleAlign objects from an MAF-format multiple alignment file. Writing in MAF format is currently unimplemented. Spec of MAF format is here: http://genome.ucsc.edu/FAQ/FAQformat...
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC - Search in distribution- Bio::AlignIO - Handler for AlignIO Formats
FAST::Bio::AlignIO::maf - Multiple Alignment Format sequence input stream
This class constructs FAST::Bio::SimpleAlign objects from an MAF-format multiple alignment file. Writing in MAF format is currently unimplemented. Spec of MAF format is here: http://genome.ucsc.edu/FAQ/FAQformat...
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC - Search in distribution- FAST::Bio::AlignIO - Handler for AlignIO Formats
lib/Bio/Gonzales/Align/IO/MAF.pm
JWB/Bio-Gonzales-0.083
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02 Jan 2021 23:10:48 UTC
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lib/App/Fasops/Command/maf2fas.pm
WANGQ/App-Fasops-0.6.4
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02 Sep 2019 19:31:56 UTC
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- App::Fasops - operating blocked fasta files
Mecom - A Perl program for protein contact interfaces evolutive analysis
HVALVERDE/Mecom-1.15
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13 Jul 2013 18:55:01 UTC
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Tutorial - Hands-on tutorial for using Bio::NEXUS module.
Tutorial to get started using Bio::NEXUS module. INTRODUCTION The NEXUS file format standard of Maddison, et al. (1997) is designed to represent sets of data, including character data (e.g., molecular sequence alignments, morphological character sets...
ARLIN/Bio-NEXUS-0.78 - 10 Feb 2012 13:31:13 UTC - Search in distribution
Mesos - perl bindings for Apache Mesos
This is a collection of perl bindings for Apache Mesos. This requires having the mesos shared library installed, in order to link against(much like python's mesos library). Dispatchers Mesos uses Mesos::Dispatchers for communicating with the underlyi...
MAF/Mesos-1.07.1 - 02 Sep 2016 00:25:32 UTC - Search in distribution
Net::ZooKeeper - Perl extension for Apache ZooKeeper
Net::ZooKeeper provides a Perl interface to the synchronous C API of Apache ZooKeeper. ZooKeeper is coordination service for distributed applications. Each connection to ZooKeeper is represented as a handle object of the class Net::ZooKeeper, similar...
MAF/Net-ZooKeeper-0.41 - 18 Jun 2015 01:39:59 UTC - Search in distribution
ZooKeeper - Perl bindings for Apache ZooKeeper
ZooKeeper is a perl interface to the Apache ZooKeeper C client library. How is this different from Net::ZooKeeper? ZooKeeper is written for asynchronous programming. To support asynchronous programs, watchers were implemented as code refs, which a Zo...
MAF/ZooKeeper-0.1.10 - 02 Oct 2016 01:13:10 UTC - Search in distribution
Sah::Schema::language::code - Language code (alpha-2 or alpha-3)
Accept only current (not retired) codes. Alpha-2 or alpha-3 codes are accepted....
PERLANCAR/Sah-Schemas-Language-0.005 - 18 Nov 2023 00:06:18 UTC - Search in distribution- Sah::Schema::language::code::alpha3 - Language code (alpha-3)
App::Egaz - Backend of Easy Genome Aligner
App::Egaz is the backend of Easy Genome Aligner. Caution: "egaz lpcnam" implement UCSC's chain-net pipeline, but some parts, e.g. "axtChain" don't work correctly under macOS. Use "egaz lastz"'s build in chaining mechanism ("C=2") instead....
WANGQ/App-Egaz-0.2.5 - 06 Mar 2020 19:08:21 UTC - Search in distribution
Broker::Async - broker tasks for multiple workers
This module brokers tasks for multiple asynchronous workers. A worker can be any code reference that returns a Future, representing work awaiting completion. Some common use cases include throttling asynchronous requests to a server, or delegating ta...
MAF/Broker-Async-0.0.6 - 28 Nov 2016 01:32:21 UTC - Search in distribution
Acme::CPANAuthors::POE - We are CPAN Authors of POE
This class provides a hash of POE namespace CPAN Authors' PAUSE ID and name to the Acme::CPANAuthors module. It is currently statically generated information, I hope to make it dynamic in the future....
BINGOS/Acme-CPANAuthors-POE-0.88 - 19 May 2023 16:48:50 UTC - Search in distribution
lib/Genome/Model/Tools/Music/Bmr/CalcCovg.pm
NNUTTER/Genome-Model-Tools-Music-0.04
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17 Aug 2012 20:27:57 UTC
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Alien::SeqAlignment::last - find, build and install the last tools
This distribution provides last so that it can be used by other Perl distributions that are on CPAN. The source code will be downloaded from the last Gitlab repo, and if that fails it will use the location of a fork by the author of this Perl module....
CHRISARG/Alien-SeqAlignment-last-0.02 - 24 Mar 2024 03:31:46 UTC - Search in distribution
Sah::Schema::country::code - Country code (alpha-2 or alpha-3)
Accept only current (not retired) codes. Alpha-2 or alpha-3 codes are accepted. Code will be converted to lowercase....
PERLANCAR/Sah-Schemas-Country-0.009 - 13 Nov 2023 00:05:40 UTC - Search in distribution- Sah::Schema::country::code::alpha3 - Country code (alpha-3)
Bio::Tools::Run::Phylo::Gerp - Wrapper for GERP
This is a wrapper for running the GERP (v2) programs 'gerpcol' and 'gerpelem' by Eugene Davydov (originally Gregory M. Cooper et al.). You can get details here: http://mendel.stanford.edu/sidowlab/. GERP can be used for phylogenetic footprinting/ sha...
CJFIELDS/BioPerl-Run-1.007003 - 08 Feb 2019 19:55:33 UTC - Search in distribution
Bio::Graphics::Glyph::allele_tower - The "allele_tower" glyph
This glyph draws a letter for each allele found at a SNP position, one above the other (i.e. in a column). For example: A G See also http://www.hapmap.org/cgi-perl/gbrowse/gbrowse 'genotyped SNPs' for an example. The common options are available (exc...
CJFIELDS/Bio-Graphics-2.40 - 16 Dec 2016 04:50:36 UTC - Search in distribution