Search results for "PHRED"
Fred Moyer (PHRED)
Bio::SAGE::DataProcessing::MinimumPhredFilter - A filter that validates sequences based on minimum Phred score.
This module is a concrete subclass of Bio::SAGE::DataProcessing::Filter. The implementation considers a sequence valid if all nucleotides have a Phred score that exceeds that specified for the filter....
SCOTTZED/Bio-SAGE-DataProcessing-1.20 - 15 Oct 2004 22:37:38 UTC - Search in distribution- Bio::SAGE::DataProcessing::AveragePhredFilter - A filter that validates sequences based on average Phred score.
- Bio::SAGE::DataProcessing - Processes raw serial analysis of gene expression (SAGE) data.
- Bio::SAGE::DataProcessing::Filter - An abstract filter for determining whether a [di]tag is worth keeping.
Bio::SeqIO - Handler for SeqIO Formats
Bio::SeqIO is a handler module for the formats in the SeqIO set (eg, Bio::SeqIO::fasta). It is the officially sanctioned way of getting at the format objects, which most people should use. The Bio::SeqIO system can be thought of like biological file ...
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC - Search in distribution- Bio::Tools::Lucy - Object for analyzing the output from Lucy, a vector and quality trimming program from TIGR
- Bio::SeqIO::phd - phd file input/output stream
- Bio::SeqIO::fastq - fastq sequence input/output stream
- 1 more result from BioPerl »
BioX::Seq - a (very) basic biological sequence object
"BioX::Seq" is a simple sequence class that can be used to represent biological sequences. It was designed as a compromise between using simple strings and hashes to hold sequences and using the rather bloated objects of Bioperl. Features (or, depend...
VOLKENING/BioX-Seq-0.008009 - 08 Jan 2024 17:27:54 UTC - Search in distribution
FASTX::Seq - A class for representing a sequence for FASTX::Reader
PROCH/FASTX-Reader-1.12.0
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26 Sep 2023 10:25:49 UTC
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FAST::Bio::SeqIO - Handler for SeqIO Formats
FAST::Bio::SeqIO is a handler module for the formats in the SeqIO set (eg, FAST::Bio::SeqIO::fasta). It is the officially sanctioned way of getting at the format objects, which most people should use. The FAST::Bio::SeqIO system can be thought of lik...
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC - Search in distribution- FAST::Bio::SeqIO::phd - phd file input/output stream
- FAST::Bio::SeqIO::fastq - fastq sequence input/output stream
Apache::Dispatch - call PerlHandlers with the ease of Registry scripts
Apache::Dispatch translates $r->uri into a class and method and runs it as a PerlHandler. Basically, this allows you to call PerlHandlers as you would Regsitry scripts without having to load your httpd.conf with a slurry of <Location> tags....
PHRED/Apache2-Dispatch-0.15 - 13 Feb 2010 02:45:06 UTC - Search in distribution- Apache2::Dispatch - call PerlHandlers with the ease of Registry scripts
Business::PayPal - Perl extension for automating PayPal transactions
new() Creates a new Business::PayPal object, it can take the following parameters: id The Business::PayPal object id, if not specified a new id will be created using md5_hex(rand()) address The address of PayPal's payment server, currently: https://w...
JOSHR/Business-PayPal-0.20 - 24 Nov 2020 15:00:54 UTC - Search in distribution
String::Strip - Perl extension for fast, commonly used, string operations
StripLTSpace - Removes Leading and Trailing spaces from given string StripTSpace - Removes Trailing spaces from given string StripLSpace - Removes Leading spaces from given string StripSpace - Removes all spaces from given string I do these things of...
PHRED/String-Strip-1.02 - 14 Feb 2012 18:24:44 UTC - Search in distribution
Acme::CPANAuthors::CPAN::Streaks::MonthlyReleases::AllTime - Authors with all-time monthly releases streak (do a release every month)
Current standings (as of 2024-04-12, produced by cpan-streaks, only streaks with length of at least 20 are included): +-----------+-----+------------+----------+-------------+ | author | len | start_date | end_date | status | +-----------+-----+-----...
PERLANCAR/Acme-CPANAuthorsBundle-CPAN-Streaks-20240412.0 - 12 Apr 2024 04:25:16 UTC - Search in distribution
App::Sandy::Command::Quality::Add - quality subcommand class. Add a quality profile to the database.
Add a new quality-profile to the database. The profile will be generated from the quality strings, which encode the phred-score in ASCII characters from 0x21 to 0x7e (lowest and highest qualities). So the valid characters are: !"#$%&'()*+,-./01234567...
TMILLER/App-Sandy-0.25 - 19 Sep 2023 17:58:11 UTC - Search in distribution
Bio::Phylo::Parsers::Fastq - Parser used by Bio::Phylo::IO, no serviceable parts inside
A FASTQ file parser. To use it, you need to pass an argument that specifies the data type of the phred scores into the parse function, i.e. my $handler_type = _DATUM_; parse( -format => 'fastq', -type => 'illumina', # to indicate how phred scores are...
RVOSA/Bio-Phylo-v2.0.1 - 30 Oct 2017 19:50:35 UTC - Search in distribution