Search results for "bio::das"
Bio::Das - Interface to Distributed Annotation System
Bio::Das provides access to genome sequencing and annotation databases that export their data in Distributed Annotation System (DAS) format version 1.5. This system is described at http://biodas.org. Both unencrypted (http:) and SSL-encrypted (https:...
LDS/Bio-Das-1.17 - 29 Jun 2010 19:43:55 UTC - Search in distribution- Bio::Das::DSN - Object encapsulation of a DAS data source
- Bio::Das::Map - Resolve map coordinates
- Bio::Das::Util - Das Utilities
- 22 more results from Bio-Das »
Bio::Das::Lite - Perl extension for the DAS (HTTP+XML) Protocol (http://biodas.org/)
This module is an implementation of a client for the DAS protocol (XML over HTTP primarily for biological-data)....
RPETTETT/Bio-Das-Lite-2.11 - 06 May 2011 10:25:32 UTC - Search in distribution
Bio::Das::SegmentI - DAS-style access to a feature database
Bio::Das::SegmentI is a simplified alternative interface to sequence annotation databases used by the distributed annotation system. In this scheme, the genome is represented as a series of landmarks. Each Bio::Das::SegmentI object ("segment") corres...
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC - Search in distribution- Bio::Das::FeatureTypeI - Simple interface to Sequence Ontology feature types
- Bio::DasI - DAS-style access to a feature database
- Bio::SeqFeature::CollectionI - An interface for a collection of SeqFeatureI objects.
Bio::DB::Das::Chado - DAS-style access to a chado database
Bio::DB::Das::Chado allows DAS style access to a Chado database, getting SeqFeatureI-compliant BioPerl objects and allowing GBrowse to access a Chado database directly....
SCAIN/Bio-DB-Das-Chado-0.35a - 07 Apr 2015 23:02:17 UTC - Search in distribution- Bio::DB::Das::Chado::Segment - DAS-style access to a chado database
- Bio::DB::Das::Chado::Segment::Feature
- gmod_chado_fts_prep.pl - prepares a Chado schema to use full text searching
Bio::Das::ProServer
ProServer is a server implementation of the DAS protocol. http://biodas.org/ ProServer is based on example preforking POEserver at http://poe.perl.org/?POE_Cookbook/Web_Server_With_Forking...
RPETTETT/Bio-Das-ProServer-2.20 - 02 Nov 2010 11:59:40 UTC - Search in distribution- Bio::Das::ProServer::SourceHydra - A runtime factory for B::D::P::SourceAdaptors
- Bio::Das::ProServer::Authenticator - authenticates DAS requests
- Bio::Das::ProServer::SourceHydra::dbi - A database-backed implementation of B::D::P::SourceHydra
- 18 more results from Bio-Das-ProServer »
Bio::Das::ProServer::SourceAdaptor::edgeexpress
capabilities...
JMS/EdgeExpressDB_0.953h - 18 May 2009 07:45:42 UTC - Search in distribution
DAS::GUS - DAS-style accession to a gus database
LDS/GBrowse-2.56
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15 Jan 2017 21:29:11 UTC
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Sah::Schema::language::code - Language code (alpha-2 or alpha-3)
Accept only current (not retired) codes. Alpha-2 or alpha-3 codes are accepted....
PERLANCAR/Sah-Schemas-Language-0.005 - 18 Nov 2023 00:06:18 UTC - Search in distribution- Sah::Schema::language::code::alpha3 - Language code (alpha-3)
Bio::DB::GFF - Storage and retrieval of sequence annotation data
Bio::DB::GFF provides fast indexed access to a sequence annotation database. It supports multiple database types (ACeDB, relational), and multiple schemas through a system of adaptors and aggregators. The following operations are supported by this mo...
CJFIELDS/Bio-DB-GFF-1.7.4 - 08 Jan 2020 20:41:58 UTC - Search in distribution
Bundle::Ensembl - Bundle for installing Ensembl Perl Modules (Built from dependencies of ENSEMBL_45 VERSION)
A Bundle of Modules related to Ensembl Genome Browser Installation (Ensembl V45). If there are any modules that needs to be installed please email me at gene@gpse.org...
ASHGENE/Bundle-Ensembl-0.03 - 03 Jul 2007 11:54:04 UTC - Search in distribution
Ace::Graphics::Track - PNG graphics of Ace::Sequence::Feature objects
The Ace::Graphics::Track class is used by Ace::Graphics::Panel to lay out a set of sequence features using a uniform glyph type. You will ordinarily work with panels rather than directly with tracks....
LDS/AcePerl-1.92 - 11 Nov 2008 16:47:31 UTC - Search in distribution- Ace::Graphics::Panel - PNG graphics of Ace::Sequence::Feature objects
- Ace::Graphics::Glyph::segments - The "discontinuous segments" glyph
Bio::FeatureIO - Handler for FeatureIO
An I/O iterator subsystem for genomic sequence features. Bio::FeatureIO is a handler module for the formats in the FeatureIO set (eg, Bio::FeatureIO::GFF). It is the officially sanctioned way of getting at the format objects, which most people should...
CJFIELDS/Bio-FeatureIO-1.6.905 - 05 Sep 2014 17:34:58 UTC - Search in distribution
Bio::DB::BioDB - class creating the adaptor factory for a particular database
This object represents a database that is implemented somehow (you should not care much as long as you can get the object). From the object you can pull out other adapters, such as the BioSeqAdapter etc....
CJFIELDS/BioPerl-DB-1.006900 - 15 Apr 2011 19:35:57 UTC - Search in distribution
Bundle::WormBase - Prerequisites for a WormBase installation
WormBase (http://www.wormbase.org/) is the online database for the model organism C. elegans and related nematodes. This bundle contains the minimum required Perl modules for running a local installation of WormBase....
TWH/Bundle-WormBase-0.001 - 27 Feb 2005 15:50:02 UTC - Search in distribution
Bio::Graphics - Generate GD images of Bio::Seq objects
Please see Bio::Graphics::Panel for the full interface. Also try the script glyph_help.pl for quick help on glyphs and their options....
CJFIELDS/Bio-Graphics-2.40 - 16 Dec 2016 04:50:36 UTC - Search in distribution- Bio::Graphics::Glyph::cds - The "cds" glyph
- Bio::Graphics::Glyph::trace - A glyph that visualizes a trace file
- Bio::Graphics::Glyph::merged_alignment - The "merged_alignment" glyph
- 69 more results from Bio-Graphics »