Search results for "module:GO"
GO - Gene Ontology Simple Utility Class
This is a simple interface to the GO toolkit TIP FOR PROGRAMMERS: If you are already familiar with object oriented perl, you should use the GO::AppHandle class; this module is intended as a simple convenience wrapper for a small section of the perl A...
SJCARBON/go-db-perl-0.04 - 21 Dec 2009 21:56:44 UTC
Sub::Go - DWIM sub blocks for smart matching
In case you don't know, smart matching ("~~") data against a code block will run the block once (for scalars) or, distributively, many times for arrays and hashes: [1..10] ~~ sub { say shift }; @arr ~~ sub { say shift }; %h ~~ sub { ... }; The motiva...
RODRIGO/Sub-Go-0.01 - 11 Jul 2011 09:05:54 UTC
GO::Node - provides information about a node in the Gene Ontology
The GO::Node package is intended to be used as a container for information about a node in one of the three Gene Ontologies. It allows the storage of the goid, and immediate parents and children, as well as paths to the top of the ontology. This pack...
SHERLOCK/GO-TermFinder-0.86 - 19 Nov 2009 17:39:14 UTC
SPVM::Go - Goroutines of The Go Programming Language
The Go class in SPVM has methods to create goroutines and manipulate channels. Goroutines and channels are features of the Go programming language....
KIMOTO/SPVM-Go-0.007002 - 07 Dec 2023 05:17:19 UTC
GO::View - Creates a gif or png image for visualizing the GO DAG
This perl module generates a graphic that displays the parent and child relationships of a selected GO term. It also provides the visualization for the GO::TermFinder perl module created by the Stanford Microarray Database (SMD). This module is usefu...
SHERLOCK/GO-TermFinder-0.86 - 19 Nov 2009 17:39:14 UTC
Alien::Go - Find or build Go
This distribution provides Go so that it can be used by other Perl distributions that are on CPAN. It does this by first trying to detect an existing install of Go on your system. If found it will use that. If it cannot be found, the source code will...
ZMUGHAL/Alien-Go-0.01 - 14 Feb 2023 09:22:54 UTC
GO::Tango - Tango ANnotates GO
THIS IS ALPHA CODE; API SUBJECT TO CHANGE...
SJCARBON/go-db-perl-0.04 - 21 Dec 2009 21:56:44 UTC
GO::Parser - parses all GO files formats and types
Module for parsing GO flat files; for examples of GO/OBO flatfile formats see: <ftp://ftp.geneontology.org/pub/go/ontology> <ftp://ftp.geneontology.org/pub/go/gene-associations> For a description of the various file formats, see: <http://www.geneonto...
CMUNGALL/go-perl-0.15 - 12 Jun 2013 16:22:41 UTC
GO::AppHandle - Gene Ontology Data API handle
This is a module for accessing Gene Ontology data sources, e.g the GO relational database. It defines a set of methods that provide a consistent interface independent of the way the GO data is stored. For an explanation of the GO project, please visi...
SJCARBON/go-db-perl-0.04 - 21 Dec 2009 21:56:44 UTC
GO::Annotation
This package currently does nothing, but is a placeholder for future development.......
SHERLOCK/GO-TermFinder-0.86 - 19 Nov 2009 17:39:14 UTC
GO::DebugUtils
Miscellaneous debugging utilities...
SJCARBON/go-db-perl-0.04 - 21 Dec 2009 21:56:44 UTC
GO::TermFinder - identify GO nodes that annotate a group of genes with a significant p-value
This package is intended to provide a method whereby the P-values of a set of GO annotations can be determined for a set of genes, based on the number of genes that exist in the particular genome (or in a selected background distribution from the gen...
SHERLOCK/GO-TermFinder-0.86 - 19 Nov 2009 17:39:14 UTC
GO::ObjFactory - GO Object Factory
You only need to be aware of this class if you are generating new objects. You should not directly create objects like this: $term = GO::Model::Term->new($h); Instead you should create them like this: $fac = GO::ObjFactory->new(); $term = $fac->creat...
CMUNGALL/go-perl-0.15 - 12 Jun 2013 16:22:41 UTC
GO::AnnotatedGene
The GO::AnnotatedGene package allows creation of objects that contains the details of a gene as determined from a gene_associations file. Typically these objects will contain the following information: Column Cardinality Contents ------ ----------- -...
SHERLOCK/GO-TermFinder-0.86 - 19 Nov 2009 17:39:14 UTC
GO::OntologyProvider - abstract base class providing API for the provision on Gene Ontology information
GO::OntologyProvider is an abstract class that defines an interface that should be implemented by specific subclasses, which may read ontology information from databases, flatfiles, XML files etc. All of the methods return either one or many GO::Node...
SHERLOCK/GO-TermFinder-0.86 - 19 Nov 2009 17:39:14 UTC
GO::AnnotationProvider - abstract base class defining interface for how Annotation information should be provided
GO::AnnotationProvider is an interface that defines an API that should be implemented by specific subclasses, which may read GO annotation from databases, flatfiles, XML files etc. GO (Gene Ontology) is a project of the Gene Ontology Consortium (http...
SHERLOCK/GO-TermFinder-0.86 - 19 Nov 2009 17:39:14 UTC