Search results for "module:Run::length"
IPC::Run - system() and background procs w/ piping, redirs, ptys (Unix, Win32)
IPC::Run allows you to run and interact with child processes using files, pipes, and pseudo-ttys. Both system()-style and scripted usages are supported and may be mixed. Likewise, functional and OO API styles are both supported and may be mixed. Vari...
TODDR/IPC-Run-20231003.0 - 03 Oct 2023 01:09:01 UTC
POSIX::Run::Capture - run command and capture its output
Runs an external command and captures its output. Both standard error and output can be captured. Standard input can be supplied as either a filehandle or a string. Upon exit, the captured streams can be accessed line by line or in one chunk. Callbac...
SGRAY/POSIX-Run-Capture-1.05 - 15 Mar 2024 12:00:39 UTC
Bio::Tools::Run::Vista - Wrapper for Vista
Pls see Vista documentation for plotfile options Wrapper for Vista : C. Mayor, M. Brudno, J. R. Schwartz, A. Poliakov, E. M. Rubin, K. A. Frazer, L. S. Pachter, I. Dubchak. VISTA: Visualizing global DNA sequence alignments of arbitrary length. Bioinf...
CJFIELDS/BioPerl-Run-1.007003 - 08 Feb 2019 19:55:33 UTC
App::Yath::Command::run - Run tests using the persistent test runner
This command will run tests through an already started persistent instance. See the start command for details on how to launch a persistant instance....
EXODIST/Test2-Harness-1.000155 - 03 Oct 2023 15:58:08 UTC
Algorithm::Evolutionary::Run - Class for setting up an experiment with algorithms and population
This is a no-fuss class to have everything needed to run an algorithm in a single place, although for the time being it's reduced to fitness functions in the A::E::F namespace, and binary strings. Mostly for demo purposes, but can be an example of cl...
JMERELO/Algorithm-Evolutionary-0.82.1 - 29 Mar 2021 11:30:17 UTC
Bio::Tools::Run::Promoterwise - Wrapper for aligning two sequences using promoterwise
Promoterwise is an alignment algorithm that relaxes the constraint that local alignments have to be co-linear. Otherwise it provides a similar model to DBA, which is designed for promoter sequence alignments by Ewan Birney. It is part of the wise2 pa...
CJFIELDS/BioPerl-Run-1.007003 - 08 Feb 2019 19:55:33 UTC
Bio::Tools::Run::Alignment::Blat
Wrapper module for Blat program. This newer version allows for all parameters to be set by passing them as an option to new(). Key bits not implemented yet (TODO): * Implement all needed Bio::Tools::Run::WrapperBase methods Missing are a few, includi...
CJFIELDS/BioPerl-Run-1.007003 - 08 Feb 2019 19:55:33 UTC
Bio::Tools::Run::StandAloneBlast - Object for the local execution of the NCBI BLAST program suite (blastall, blastpgp, bl2seq). There is experimental support for WU-Blast and NCBI rpsblast.
This DESCRIPTION only documents Bio::Tools::Run::StandAloneBlast, a Bioperl object for running the NCBI standAlone BLAST package. Blast itself is a large & complex program - for more information regarding BLAST, please see the BLAST documentation whi...
CJFIELDS/BioPerl-Run-1.007003 - 08 Feb 2019 19:55:33 UTC
Bio::Tools::Run::Alignment::TCoffee - Object for the calculation of a multiple sequence alignment from a set of unaligned sequences or alignments using the TCoffee program
Note: this DESCRIPTION only documents the (Bio)perl interface to TCoffee. Helping the module find your executable You will need to enable TCoffee to find the t_coffee program. This can be done in (at least) three ways: 1. Make sure the t_coffee execu...
CDRAUG/Bio-Tools-Run-Alignment-TCoffee-1.7.4 - 09 Jul 2018 18:31:30 UTC
Bio::Tools::Run::Alignment::Clustalw - Object for the calculation of a multiple sequence alignment from a set of unaligned sequences or alignments using the Clustalw program
Note: this DESCRIPTION only documents the Bioperl interface to Clustalw. Clustalw, itself, is a large & complex program - for more information regarding clustalw, please see the clustalw documentation which accompanies the clustalw distribution. Clus...
CDRAUG/Bio-Tools-Run-Alignment-Clustalw-1.7.4 - 11 Jul 2018 14:57:04 UTC
Bio::Tools::Run::Phylo::Phylip::ProtDist - Wrapper for the phylip program protdist
Wrapper for protdist Joseph Felsentein for creating a distance matrix comparing protein sequences from a multiple alignment file or a Bio::SimpleAlign object and returns a Bio::Matrix::PhylipDist object; VERSION Support This wrapper currently support...
CJFIELDS/BioPerl-Run-1.007003 - 08 Feb 2019 19:55:33 UTC
Bio::Tools::Run::Phylo::Phylip::Neighbor - Wrapper for the phylip program neighbor by Joseph Felsenstein for creating a phylogenetic tree(either through Neighbor or UPGMA) based on protein distances based on amino substitution rate.
CJFIELDS/BioPerl-Run-1.007003
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08 Feb 2019 19:55:33 UTC
Bio::Tools::Run::Phylo::Phast::PhastCons - Wrapper for footprinting using phastCons
This is a wrapper for running the phastCons application by Adam Siepel. You can get details here: http://compgen.bscb.cornell.edu/~acs/software.html phastCons is used for phylogenetic footprinting/ shadowing. Currently the interface is extremely simp...
CJFIELDS/BioPerl-Run-1.007003 - 08 Feb 2019 19:55:33 UTC