Search results for "dist:Bio-GeneDesign GENE"
Bio::GeneDesign::IO
GeneDesign is a library for the computer-assisted design of synthetic genes...
NOTDOCTOR/Bio-GeneDesign-5.56 - 19 Jun 2020 16:50:54 UTC
Bio::GeneDesign::Basic
GeneDesign is a library for the computer-assisted design of synthetic genes...
NOTDOCTOR/Bio-GeneDesign-5.56 - 19 Jun 2020 16:50:54 UTC
Bio::GeneDesign::Codons
GeneDesign functions for codon analysis and manipulation...
NOTDOCTOR/Bio-GeneDesign-5.56 - 19 Jun 2020 16:50:54 UTC
Bio::GeneDesign::Random
Random DNA Generators...
NOTDOCTOR/Bio-GeneDesign-5.56 - 19 Jun 2020 16:50:54 UTC
Bio::GeneDesign::PrefixTree - A suffix tree implementation for nucleotide searching
GeneDesign uses this object to parse peptide sequences for restriction enzyme recognition site possibilities...
NOTDOCTOR/Bio-GeneDesign-5.56 - 19 Jun 2020 16:50:54 UTC
Bio::GeneDesign::CodonJuggle
Codon Juggle a sequence using rscu data to determine replacement likelihood...
NOTDOCTOR/Bio-GeneDesign-5.56 - 19 Jun 2020 16:50:54 UTC
Bio::GeneDesign::ReverseTranslate
Reverse translate a sequence using rscu values to set replacement likelihood...
NOTDOCTOR/Bio-GeneDesign-5.56 - 19 Jun 2020 16:50:54 UTC
Bio::GeneDesign::RestrictionEnzyme
GeneDesign object that represents a type II restriction enzyme...
NOTDOCTOR/Bio-GeneDesign-5.56 - 19 Jun 2020 16:50:54 UTC
Bio::GeneDesign::RestrictionEnzymes
GeneDesign functions for handling restriction enzymes...
NOTDOCTOR/Bio-GeneDesign-5.56 - 19 Jun 2020 16:50:54 UTC
GD_Repeat_Smash.pl
Output will be named according to the name of the input file, and will be tagged with _RS....
NOTDOCTOR/Bio-GeneDesign-5.56 - 19 Jun 2020 16:50:54 UTC
GD_Graph_Dotplot.pl
Makes dotplots. If you give a file with one sequence in, it will make a self dotplot. If you give a file with multiple sequences, it will give each pairwise combination....
NOTDOCTOR/Bio-GeneDesign-5.56 - 19 Jun 2020 16:50:54 UTC
GD_Juggle_Codons.pl
Given at least one protein-coding gene as input, the Juggle_Codons script can use several algorithms to modify the sequence without altering its translation. It is thus possible to generate a sequence that is optimized for expression, as different as...
NOTDOCTOR/Bio-GeneDesign-5.56 - 19 Jun 2020 16:50:54 UTC
GD_Filter_Enzymes.pl
Creates a list of restriction enzymes that meet optionally provided criteria. Any criteria left blank will not be used to filter the results....
NOTDOCTOR/Bio-GeneDesign-5.56 - 19 Jun 2020 16:50:54 UTC
GD_Graph_RSCU_Values.pl
-r OR -org must be provided. If both are given the table will be treated as another organism, named after the table's filename....
NOTDOCTOR/Bio-GeneDesign-5.56 - 19 Jun 2020 16:50:54 UTC
GD_Reverse_Translate.pl
Given at least one protein sequence as input, the Reverse_Translate script generates synonymous nucleotide sequences using either a user-defined RSCU table or an RSCU table provided by GeneDesign If no algorithm is specified, the balanced algorithm w...
NOTDOCTOR/Bio-GeneDesign-5.56 - 19 Jun 2020 16:50:54 UTC
GD_List_Codon_Tables.pl
Lists the codon_tables subdirectory from GeneDesign's configuration...
NOTDOCTOR/Bio-GeneDesign-5.56 - 19 Jun 2020 16:50:54 UTC
GD_Generate_RSCU_Table.pl
Given at least one protein-coding gene as input, the Generate_RSCU_Table script generates a table of RSCU values that represents the bias in codon usage. Output will be named according to the name of the input file, and will be named "inputfilename_G...
NOTDOCTOR/Bio-GeneDesign-5.56 - 19 Jun 2020 16:50:54 UTC