Search results for "dist:Bio-Phylo Bio::Tree::Statistics"
Bio::Phylo::Forest::TreeRole - Extra behaviours for a phylogenetic tree
The object models a phylogenetic tree, a container of Bio::Phylo::Forest::Node objects. The tree object inherits from Bio::Phylo::Listable, so look there for more methods....
RVOSA/Bio-Phylo-v2.0.1 - 30 Oct 2017 19:50:35 UTC
Bio::Phylo::EvolutionaryModels - Evolutionary models for phylogenetic trees and methods to sample these Klaas Hartmann, September 2007
This package contains evolutionary models for phylogenetic trees and algorithms for sampling from these models. It is a non-OO module that optionally exports the 'sample', 'constant_rate_birth' and 'constant_rate_birth_death' subroutines into the cal...
RVOSA/Bio-Phylo-v2.0.1 - 30 Oct 2017 19:50:35 UTC
Bio::Phylo::Matrices::MatrixRole - Extra behaviours for a character state matrix
This module defines a container object that holds Bio::Phylo::Matrices::Datum objects. The matrix object inherits from Bio::Phylo::Listable, so the methods defined there apply here....
RVOSA/Bio-Phylo-v2.0.1 - 30 Oct 2017 19:50:35 UTC
Bio::Phylo::Models::Substitution::Dna - DNA substitution model
This is a superclass for models of DNA evolution. Classes that inherit from this class provide methods for retreiving general parameters such as substitution rates or the number of states as well as model-specific parameters. Currently most of the po...
RVOSA/Bio-Phylo-v2.0.1 - 30 Oct 2017 19:50:35 UTC
Bio::Phylo::Models::Substitution::Binary - Binary character substitution model
This is a class that encapsulates an instantaneous transition model for a binary character. The model is asymmetrical in that the forward and reverse rates (can) differ. The rates can be inferred from a character in a character state matrix by modelt...
RVOSA/Bio-Phylo-v2.0.1 - 30 Oct 2017 19:50:35 UTC