Search results for "dist:EdgeExpressDB ', -end =>"
EEDB
base module for entire API/toolkit for easy include and versioning...
JMS/EdgeExpressDB_0.953h - 18 May 2009 07:45:42 UTC
EEDB::Chrom
An object that corresponds to specific chromosomes within an assembly. Because Chrom is tied to a specific assembly, an instance of a Chrom identifies not only the chromosome, but also the assembly and species As with all objects in EEDB, Chrom inter...
JMS/EdgeExpressDB_0.953h - 18 May 2009 07:45:42 UTC
EEDB::Tools::BEDLoader
This is a simple class to wrap the functionality of BED file parsing and conversion into eeDB objects into a nice modular component....
JMS/EdgeExpressDB_0.953h - 18 May 2009 07:45:42 UTC
EEDB::Tools::PSLLoader
This is a processing class. Take two FeatureSource with features on chromosomes, streams both of them and does a merge-sort-like comparison. Uses a call-out function to allow the user to 'do things' with the feature pairs....
JMS/EdgeExpressDB_0.953h - 18 May 2009 07:45:42 UTC
EEDB::Tools::MultiLoader
MultiLoader is a single class which wraps up database specific optimizations for speeding up bulk loading. Since eeDB is primarily a data-mining system, most of the data is loaded in bulk. This loader augments the class specific ->store() functions. ...
JMS/EdgeExpressDB_0.953h - 18 May 2009 07:45:42 UTC
EEDB::Tools::OverlapCompare
This is a general purpose processing tool designed to do genome spatial comparisons. It is configured with a set of feature sources and parameters and call-back functions. It is then fed a stream of features sorted by chromsome location. given the ov...
JMS/EdgeExpressDB_0.953h - 18 May 2009 07:45:42 UTC