Search results for "dist:App-Sandy SANTOS"
App::Sandy - App builder that simulates single-end and paired-end reads.
Sandy is a bioinformatics tool that provides a simple engine to simulate next-generation sequencing for genomic and transcriptomic data. Simulated data works as experimental control - a key step to optimize NGS analysis - in comparison to hypothetica...
TMILLER/App-Sandy-0.25 - 19 Sep 2023 17:58:11 UTC
App::Sandy::DB - Singleton class to manage database
TMILLER/App-Sandy-0.25
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19 Sep 2023 17:58:11 UTC
App::Sandy::Seq - Base class to simulate seq entries
TMILLER/App-Sandy-0.25
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19 Sep 2023 17:58:11 UTC
App::Sandy::CLI - Base class for command line interface.
This is the base class for CLI interface...
TMILLER/App-Sandy-0.25 - 19 Sep 2023 17:58:11 UTC
App::Sandy::BGZF - Wrapper around Compress::BGZF::Writer in order
TMILLER/App-Sandy-0.25
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19 Sep 2023 17:58:11 UTC
App::Sandy::Base - Policy and base module to App::Sandy project.
TMILLER/App-Sandy-0.25
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19 Sep 2023 17:58:11 UTC
App::Sandy::Types - Moose type constraints for App::Sandy project
TMILLER/App-Sandy-0.25
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19 Sep 2023 17:58:11 UTC
App::Sandy::Quality - Class to simulate quality entries
TMILLER/App-Sandy-0.25
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19 Sep 2023 17:58:11 UTC
App::Sandy::Role::IO - Input and output custom wrappers.
TMILLER/App-Sandy-0.25
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19 Sep 2023 17:58:11 UTC
App::Sandy::Simulator - Class responsible to make the simulation
TMILLER/App-Sandy-0.25
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19 Sep 2023 17:58:11 UTC
App::Sandy::CLI::App - App::Sandy::CLI subclass for command line application interface.
This is the base interface to application class. Classes need to override command_map method to provide command arguments...
TMILLER/App-Sandy-0.25 - 19 Sep 2023 17:58:11 UTC
App::Sandy::PieceTable - Implement a piece table data structure class
TMILLER/App-Sandy-0.25
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19 Sep 2023 17:58:11 UTC
App::Sandy::Role::SeqID - Role for seqid standardization
TMILLER/App-Sandy-0.25
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19 Sep 2023 17:58:11 UTC
App::Sandy::Role::Digest - Wrapper on Simulator class for genome/transcriptome sequencing
TMILLER/App-Sandy-0.25
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19 Sep 2023 17:58:11 UTC
App::Sandy::CLI::Command - App::Sandy::CLI subclass for commands interface
This is the base interface to command classes. Command classes need to override "validate_args", "validate_opts" and "execute" methods...
TMILLER/App-Sandy-0.25 - 19 Sep 2023 17:58:11 UTC