Search results for "dist:Bio-CIPRES VOLKENING"
Bio::CIPRES - interface to the CIPRES REST API
"Bio::CIPRES" is an interface to the CIPRES REST API for running phylogenetic analyses. Currently it provides general classes and methods for job submission and handling - determination of the correct parameters to submit is up to the user (check "SE...
VOLKENING/Bio-CIPRES-0.005 - 21 Jan 2019 05:04:30 UTC
Bio::CIPRES::Job - a CIPRES job class
"Bio::CIPRES::Job" is a class representing a single CIPRES job. Its purpose is to simplify handling of job status and job outputs. Users should not create "Bio::CIPRES::Job" objects directly - they are returned by methods in the Bio::CIPRES class....
VOLKENING/Bio-CIPRES-0.005 - 21 Jan 2019 05:04:30 UTC
Bio::CIPRES::Error - A simple error class for the CIPRES API
"Bio::CIPRES::Error" is a simple error class for the CIPRES API. Its purpose is to parse the XML error report returned by CIPRES and provide an object that can be used in different contexts. In string context it returns a textual summary of the error...
VOLKENING/Bio-CIPRES-0.005 - 21 Jan 2019 05:04:30 UTC
Bio::CIPRES::Output - a single CIPRES job output file
"Bio::CIPRES::Output" objects represent single output files produced by a job run. Methods allow for querying simple file attributes and downloading the file to memory or disk. Objects of this class should not be created directly - they are returned ...
VOLKENING/Bio-CIPRES-0.005 - 21 Jan 2019 05:04:30 UTC
Bio::CIPRES::Message - A simple message class for the CIPRES API
"Bio::CIPRES::Message" is a simple message class for the CIPRES API. Its purpose is to parse the XML message nodes returned by CIPRES and provide an object that can be used in different contexts. In string context it returns a textual summary of the ...
VOLKENING/Bio-CIPRES-0.005 - 21 Jan 2019 05:04:30 UTC
run_cipres - run a CIPRES tool via the REST API and fetch all outputs
This tool takes a tool ID and set of input files, submits a job to CIPRES, and fetches the results upon completion. The command line syntax is described further below....
VOLKENING/Bio-CIPRES-0.005 - 21 Jan 2019 05:04:30 UTC