Bio::CUA - Codon Usage Analyzer.

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The aim of this distribution is to provide comprehensive and flexible tools to analyze codon usage bias (CUB) and relevant problems, so that users can speed up the genetic research by taking advantage of this convenience. One amino acid can be encode...

FORTUNE/Bio-CUA-1.04 - 12 Jul 2015 19:52:07 UTC

Bio::CUA::Summarizer - a class to summarize features of sequences.

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FORTUNE/Bio-CUA-1.04 - 12 Jul 2015 19:52:07 UTC

Bio::CUA::CodonTable - A package processing genetic codon table

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FORTUNE/Bio-CUA-1.04 - 12 Jul 2015 19:52:07 UTC

Bio::CUA::CUB::Builder - A module to calculate codon usage bias (CUB) metrics at codon level and other parameters

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Codon usage bias (CUB) can be represented at two levels, codon and sequence. The latter is often computed as the geometric means of the sequence's codons. This module caculates CUB metrics at codon level. Supported CUB metrics include CAI (codon adap...

FORTUNE/Bio-CUA-1.04 - 12 Jul 2015 19:52:07 UTC

Bio::CUA::CUB::Calculator - A module to calculate codon usage bias (CUB) indice for protein-coding sequences

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Codon usage bias (CUB) can be represented at two levels, codon and sequence. The latter is often computed as the geometric means of the sequence's codons. This module caculates CUB metrics at sequence level. Supported CUB metrics include CAI (codon a...

FORTUNE/Bio-CUA-1.04 - 12 Jul 2015 19:52:07 UTC

cub_seq.pl - a program to calculate sequence codon usage bias metrics and other sequence parameters.

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FORTUNE/Bio-CUA-1.04 - 12 Jul 2015 19:52:07 UTC

cai_codon.pl - a program to calculate CAI for each codon

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FORTUNE/Bio-CUA-1.04 - 12 Jul 2015 19:52:07 UTC