Search results for "dist:Bio-Coordinate HEIKKI"
Bio::Coordinate - Modules for working with biological coordinates
Bio::Coordinate classes are used for working with various biological coordinate systems. See Bio::Coordinate::Collection and Bio::Collection::Pair for examples....
CJFIELDS/Bio-Coordinate-1.007001 - 15 Dec 2016 05:03:14 UTC
Bio::Coordinate::Pair - Continuous match between two coordinate sets.
This class represents a one continuous match between two coordinate systems represented by Bio::Location::Simple objects. The relationship is directed and reversible. It implements methods to ensure internal consistency, and map continuous and split ...
CJFIELDS/Bio-Coordinate-1.007001 - 15 Dec 2016 05:03:14 UTC
Bio::Coordinate::Utils - Additional methods to create Bio::Coordinate objects.
This class is a holder of methods that work on or create Bio::Coordinate::MapperI- compliant objects. . These methods are not part of the Bio::Coordinate::MapperI interface and should in general not be essential to the primary function of sequence ob...
CJFIELDS/Bio-Coordinate-1.007001 - 15 Dec 2016 05:03:14 UTC
Bio::Coordinate::Chain - Mapping locations through a chain of coordinate mappers.
This class assumes that you have built several mappers and want to link them together so that output from the previous mapper is the next mappers input. This way you can build arbitrarily complex mappers from simpler components. Note that Chain does ...
CJFIELDS/Bio-Coordinate-1.007001 - 15 Dec 2016 05:03:14 UTC
Bio::Coordinate::Graph - Finds shortest path between nodes in a graph.
This class calculates the shortest path between input and output coordinate systems in a graph that defines the relationships between them. This class is primarely designed to analyze gene-related coordinate systems. See Bio::Coordinate::GeneMapper. ...
CJFIELDS/Bio-Coordinate-1.007001 - 15 Dec 2016 05:03:14 UTC
Bio::Coordinate::ResultI - Interface to identify coordinate mapper results.
ResultI identifies Bio::LocationIs returned by Bio::Coordinate::MapperI implementing classes from other locations....
CJFIELDS/Bio-Coordinate-1.007001 - 15 Dec 2016 05:03:14 UTC
Bio::Coordinate::Result - Results from coordinate transformation.
The results from Bio::Coordinate::MapperI are kept in an object which itself is a split location, See Bio::Location::Split. The results are either Matches or Gaps. See Bio::Coordinate::Result::Match and Bio::Coordinate::Result::Gap. If only one Match...
CJFIELDS/Bio-Coordinate-1.007001 - 15 Dec 2016 05:03:14 UTC
Bio::Coordinate::MapperI - Interface describing coordinate mappers.
MapperI defines methods for classes capable for mapping locations between coordinate systems....
CJFIELDS/Bio-Coordinate-1.007001 - 15 Dec 2016 05:03:14 UTC
Bio::Coordinate::Result::Gap - Another name for Bio::Location::Simple.
This is a location object for coordinate mapping results....
CJFIELDS/Bio-Coordinate-1.007001 - 15 Dec 2016 05:03:14 UTC
Bio::Coordinate::Collection - Noncontinuous match between two coordinate sets.
Generic, context neutral mapper to provide coordinate transforms between two disjoint coordinate systems. It brings into Bioperl the functionality from Ewan Birney's Bio::EnsEMBL::Mapper ported into current bioperl. This class is aimed for representi...
CJFIELDS/Bio-Coordinate-1.007001 - 15 Dec 2016 05:03:14 UTC
Bio::Coordinate::GeneMapper - Transformations between gene related coordinate systems.
Bio::Coordinate::GeneMapper is a module for simplifying the mappings of coodinate locations between various gene related locations in human genetics. It also adds a special human genetics twist to coordinate systems by making it possible to disable t...
CJFIELDS/Bio-Coordinate-1.007001 - 15 Dec 2016 05:03:14 UTC
Bio::Coordinate::Result::Match - Another name for Bio::Location::Simple.
This is a location class for coordinate mapping results....
CJFIELDS/Bio-Coordinate-1.007001 - 15 Dec 2016 05:03:14 UTC
Bio::Coordinate::ExtrapolatingPair - Continuous match between two coordinate sets.
This class represents a one continuous match between two coordinate systems represented by Bio::Location::Simple objects. The relationship is directed and reversible. It implements methods to ensure internal consistency, and map continuous and split ...
CJFIELDS/Bio-Coordinate-1.007001 - 15 Dec 2016 05:03:14 UTC