Search results for "dist:Bio-DB-GFF Bio::DB::DBI::Pg"
Bio::DB::GFF::Adaptor::dbi::pg - Database adaptor for a specific postgres schema
This adaptor implements a specific postgres database schema that is compatible with Bio::DB::GFF. It inherits from Bio::DB::GFF::Adaptor::dbi, which itself inherits from Bio::DB::GFF. The schema uses several tables: fdata This is the feature data tab...
CJFIELDS/Bio-DB-GFF-1.7.4 - 08 Jan 2020 20:41:58 UTC
Bio::DB::GFF::Adaptor::dbi::pg_fts - Database adaptor for a specific postgres schema with a TSearch2 implementation
This adaptor is based on Bio::DB::GFF::Adaptor::dbi::pg but it implements the TSearch2 PostgreSQL contrib module for fast full text searching. To use this module with your PostgreSQL GFF database, you need to make TSearch2 available in the database. ...
CJFIELDS/Bio-DB-GFF-1.7.4 - 08 Jan 2020 20:41:58 UTC
Bio::DB::GFF - Storage and retrieval of sequence annotation data
Bio::DB::GFF provides fast indexed access to a sequence annotation database. It supports multiple database types (ACeDB, relational), and multiple schemas through a system of adaptors and aggregators. The following operations are supported by this mo...
CJFIELDS/Bio-DB-GFF-1.7.4 - 08 Jan 2020 20:41:58 UTC
bp_genbank2gff.pl - Load a Bio::DB::GFF database from GENBANK files.
This script loads a Bio::DB::GFF database with the features contained in a either a local genbank file or an accession that is fetched from genbank. Various command-line options allow you to control which database to load and whether to allow an exis...
CJFIELDS/Bio-DB-GFF-1.7.4 - 08 Jan 2020 20:41:58 UTC