Search results for "dist:Bio-DB-GFF Bio::DB::GFF::Aggregator::match"
Bio::DB::GFF::Aggregator::match - Match aggregator
This aggregator is used for Sequence Ontology-compatible gapped alignments, in which there is a single top-level alignment called "match" and a series of subalignments called either "similarity" or "HSP". Also see the "alignment" aggregator....
CJFIELDS/Bio-DB-GFF-1.7.4 - 08 Jan 2020 20:41:58 UTC
Bio::DB::GFF::Aggregator - Aggregate GFF groups into composite features
Bio::DB::GFF::Aggregator is used to aggregate GFF groups into composite features. Each composite feature has a "main part", the top-level feature, and a series of zero or more subparts, retrieved with the sub_SeqFeature() method. The aggregator class...
CJFIELDS/Bio-DB-GFF-1.7.4 - 08 Jan 2020 20:41:58 UTC
Bio::DB::GFF - Storage and retrieval of sequence annotation data
Bio::DB::GFF provides fast indexed access to a sequence annotation database. It supports multiple database types (ACeDB, relational), and multiple schemas through a system of adaptors and aggregators. The following operations are supported by this mo...
CJFIELDS/Bio-DB-GFF-1.7.4 - 08 Jan 2020 20:41:58 UTC
Bio::DB::GFF::Feature - A relative segment identified by a feature type
Bio::DB::GFF::Feature is a stretch of sequence that corresponding to a single annotation in a GFF database. It inherits from Bio::DB::GFF::RelSegment, and so has all the support for relative addressing of this class and its ancestors. It also inherit...
CJFIELDS/Bio-DB-GFF-1.7.4 - 08 Jan 2020 20:41:58 UTC