Search results for "dist:Bio-DB-GFF Bio::Ontology::Ontology"
Bio::DB::GFF::Aggregator::gene - Sequence Ontology Geene
Bio::DB::GFF::Aggregator::gene is identical to so_transcript, but is used in those cases where you would like the name of the aggregated feature to be "gene" rather than "processed_transcript". It aggregates raw "exon," "CDS", "five_prime_UTR", "thre...
CJFIELDS/Bio-DB-GFF-1.7.4 - 08 Jan 2020 20:41:58 UTC
Bio::DB::GFF::Aggregator::so_transcript - Sequence Ontology Transcript
Bio::DB::GFF::Aggregator::so_transcript is identical to the processed_transcript aggregator, which was designed to be compatible with the Sequence Ontology canonical gene. It aggregates raw "exon," "CDS", "five_prime_UTR", "three_prime_UTR", "transcr...
CJFIELDS/Bio-DB-GFF-1.7.4 - 08 Jan 2020 20:41:58 UTC
Bio::DB::GFF::Aggregator::processed_transcript - Sequence Ontology Transcript
Bio::DB::GFF::Aggregator::processed_transcript is one of the default aggregators, and was written to be compatible with the Sequence Ontology canonical gene. It aggregates raw "exon," "CDS", "five_prime_UTR", "three_prime_UTR", "transcription_start_s...
CJFIELDS/Bio-DB-GFF-1.7.4 - 08 Jan 2020 20:41:58 UTC
Bio::DB::GFF::Segment - Simple DNA segment object
Bio::DB::GFF::Segment provides the basic representation of a range of DNA contained in a GFF database. It is the base class from which the Bio::DB::GFF::RelSegment and Bio::DB::GFF::Feature classes are derived. Generally, you will not create or manip...
CJFIELDS/Bio-DB-GFF-1.7.4 - 08 Jan 2020 20:41:58 UTC
Bio::DB::GFF::Aggregator::match - Match aggregator
This aggregator is used for Sequence Ontology-compatible gapped alignments, in which there is a single top-level alignment called "match" and a series of subalignments called either "similarity" or "HSP". Also see the "alignment" aggregator....
CJFIELDS/Bio-DB-GFF-1.7.4 - 08 Jan 2020 20:41:58 UTC
Bio::DB::GFF::Aggregator::coding - The Coding Region Aggregator
Bio::DB::GFF::Aggregator::coding aggregates "CDS" features into a feature called "coding" and was written to be compatible with the Sequence Ontology canonical gene. The CDS features are expected to belong to a parent of type "mRNA," but the aggregat...
CJFIELDS/Bio-DB-GFF-1.7.4 - 08 Jan 2020 20:41:58 UTC