Search results for "dist:Bio-DB-HTS Bio::Align"
Bio::DB::HTS::AlignWrapper - Add high-level methods to Bio::DB::HTS::Alignment
This is a wrapper around Bio::DB::HTS::Alignment that adds the following high-level methods. These are described in detail in "High-level Bio::DB::HTS::Alignment methods" in Bio::DB::HTS::Alignment. add_segment() add a new subfeature to split alignme...
AVULLO/Bio-DB-HTS-3.01 - 23 Apr 2019 13:51:11 UTC
Bio::DB::HTS - Read files using HTSlib including BAM/CRAM, Tabix and BCF database files
This module provides a Perl interface to the HTSlib library for indexed and unindexed SAM/BAM/CRAM sequence alignment databases. It provides support for retrieving information on individual alignments, read pairs, and alignment coverage information a...
AVULLO/Bio-DB-HTS-3.01 - 23 Apr 2019 13:51:11 UTC
Bio::DB::HTS::Query - Object representing the query portion of a BAM/SAM alignment
This is a simple Bio::SeqFeatureI object that represents the query part of a SAM alignment. Methods POD ERRORS Hey! The above document had some coding errors, which are explained below: Around line 8: =over is the last thing in the document?!...
AVULLO/Bio-DB-HTS-3.01 - 23 Apr 2019 13:51:11 UTC
Bio::DB::HTS::Alignment - The HTS alignment object
The Bio::DB::HTS::Alignment and Bio::DB::HTS::AlignWrapper classes together represent an alignment between a sequence read (the "query") and a reference sequence (the "target"). Bio::DB::HTS::Alignment adheres strictly to the C-level BAM library's de...
AVULLO/Bio-DB-HTS-3.01 - 23 Apr 2019 13:51:11 UTC