Search results for "dist:Bio-DB-NCBIHelper genbank"
Bio::DB::GenBank - Database object interface to GenBank
Allows the dynamic retrieval of Bio::Seq sequence objects from the GenBank database at NCBI, via an Entrez query. WARNING: Please do NOT spam the Entrez web server with multiple requests. NCBI offers Batch Entrez for this purpose. Note that when quer...
CJFIELDS/Bio-DB-NCBIHelper-1.7.8 - 15 Dec 2023 04:25:18 UTC
Bio::DB::Query::GenBank - Build a GenBank Entrez Query
This class encapsulates NCBI Entrez queries. It can be used to store a list of GI numbers, to translate an Entrez query expression into a list of GI numbers, or to count the number of terms that would be returned by a query. Once created, the query o...
CJFIELDS/Bio-DB-NCBIHelper-1.7.8 - 15 Dec 2023 04:25:18 UTC
bp_download_query_genbank - script to query Genbank and retrieve records
CJFIELDS/Bio-DB-NCBIHelper-1.7.8
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15 Dec 2023 04:25:18 UTC
bp_biofetch_genbank_proxy.pl - Caching BioFetch-compatible web proxy for GenBank
This CGI script acts as the server side of the BioFetch protocol as described in http://obda.open-bio.org/Specs/. It provides two database access services, one for data source "genbank" (nucleotide entries) and the other for data source "genpep" (pro...
CJFIELDS/Bio-DB-NCBIHelper-1.7.8 - 15 Dec 2023 04:25:18 UTC
Bio::DB::GenPept - Database object interface to GenPept
Allows the dynamic retrieval of Sequence objects (Bio::Seq) from the GenPept database at NCBI, via an Entrez query. WARNING: Please do NOT spam the Entrez web server with multiple requests. NCBI offers Batch Entrez for this purpose. Batch Entrez supp...
CJFIELDS/Bio-DB-NCBIHelper-1.7.8 - 15 Dec 2023 04:25:18 UTC
Bio::DB::NCBIHelper - A collection of routines useful for queries to NCBI databases.
Provides a single place to setup some common methods for querying NCBI web databases. This module just centralizes the methods for constructing a URL for querying NCBI GenBank and NCBI GenPept and the common HTML stripping done in postprocess_data()....
CJFIELDS/Bio-DB-NCBIHelper-1.7.8 - 15 Dec 2023 04:25:18 UTC