Search results for "dist:Bio-Grep ROOT"
Bio::Grep::Root - Superclass for all Bio::Grep* packages
This superclass adds some useful methods to all Bio::Grep packages....
LIMAONE/Bio-Grep-v0.10.6 - 12 Nov 2009 20:01:33 UTC
Bio::Grep - Perl extension for searching in DNA and Protein sequences
Bio-Grep is a collection of Perl modules for searching in DNA and Protein sequences. It supports different back-ends, most importantly some (enhanced) suffix array implementations. Currently, there is no suffix array tool that works in all scenarios ...
LIMAONE/Bio-Grep-v0.10.6 - 12 Nov 2009 20:01:33 UTC
Bio::Grep::Backend::RE - Perl Regular Expression back-end
Bio::Grep::Backend::RE searches for a query with a Perl Regular Expression. Internally, it pre-compiles the specified regex (with the appended modifiers i, m, s and x), matches it against every line in the database with the looping modifier g, and th...
LIMAONE/Bio-Grep-v0.10.6 - 12 Nov 2009 20:01:33 UTC
Bio::Grep::SearchResult - Data structure for a back-end search hit
Bio::Grep::SearchResult is the data structure for one hit in the database....
LIMAONE/Bio-Grep-v0.10.6 - 12 Nov 2009 20:01:33 UTC
Bio::Grep::Backend::Agrep - Agrep back-end
Bio::Grep::Backend::Agrep searches for a query with agrep....
LIMAONE/Bio-Grep-v0.10.6 - 12 Nov 2009 20:01:33 UTC
Bio::Grep::Backend::Vmatch - Vmatch back-end
Bio::Grep::Backend::Vmatch searches for a query in a "Vmatch" suffix array....
LIMAONE/Bio-Grep-v0.10.6 - 12 Nov 2009 20:01:33 UTC
Bio::Grep::Backend::GUUGle - GUUGle back-end
Bio::Grep::Backend::GUUGle searches for a query in a "GUUGle" suffix array....
LIMAONE/Bio-Grep-v0.10.6 - 12 Nov 2009 20:01:33 UTC
Bio::Grep::Filter::FilterI - Superclass for all filter modules
Bio::Grep::Filter::FilterI is the superclass for all filter modules. Don't use this directly. A Filter module implements a filter function that returns 1 if query and subject pass the filter, 0 otherwise. If the member variable "delete" is 1, then th...
LIMAONE/Bio-Grep-v0.10.6 - 12 Nov 2009 20:01:33 UTC
Bio::Grep::Backend::BackendI - Superclass for all back-ends
Bio::Grep::Backend::BackendI is the superclass for all back-ends. Don't use this class directly....
LIMAONE/Bio-Grep-v0.10.6 - 12 Nov 2009 20:01:33 UTC