Search results for "dist:Bio-Phylo Bio::Structure::IO"
Bio::Phylo::NeXML::DOM - XML DOM support for Bio::Phylo
This module adds "to_dom" methods to Bio::Phylo::NeXML::Writable classes, which provide NeXML-valid objects for document object model manipulation. DOM formats currently available are "XML::Twig" and "XML::LibXML". For any "XMLWritable" object, use "...
RVOSA/Bio-Phylo-v2.0.1 - 30 Oct 2017 19:50:35 UTC
Bio::Phylo::Unparsers::Pagel - Serializer used by Bio::Phylo::IO, no serviceable parts inside
This module unparses a Bio::Phylo data structure into an input file for Discrete/Continuous/Multistate. The pagel file format (as it is interpreted here) consists of: first line the number of tips, the number of characters subsequent lines offspring ...
RVOSA/Bio-Phylo-v2.0.1 - 30 Oct 2017 19:50:35 UTC
Bio::Phylo::Unparsers::Phylip - Serializer used by Bio::Phylo::IO, no serviceable parts inside
This module unparses a Bio::Phylo data structure into an input file for PHYLIP and RAxML. The file format (as it is interpreted here) consists of: first line the number of species, a space, the number of characters subsequent lines ten-character spec...
RVOSA/Bio-Phylo-v2.0.1 - 30 Oct 2017 19:50:35 UTC
Bio::Phylo::Parsers::Adjacency - Parser used by Bio::Phylo::IO, no serviceable parts inside
This module parses a tree structure from tabular data organized as an "adjacency list", i.e. child -> parent relationships. The table should at least have the following columns: 'child' and 'parent'. 'length' is interpreted as branch length. Columns ...
RVOSA/Bio-Phylo-v2.0.1 - 30 Oct 2017 19:50:35 UTC
Bio::Phylo::Unparsers::Adjacency - Serializer used by Bio::Phylo::IO, no serviceable parts inside
This module turns a tree structure into tabular data organized as an "adjacency list", i.e. child -> parent relationships. The table at least has the following columns: 'child' and 'parent'. 'length' is interpreted as branch length. Columns starting ...
RVOSA/Bio-Phylo-v2.0.1 - 30 Oct 2017 19:50:35 UTC