Search results for "dist:Bio-SamTools Bio::Align"
Bio::DB::Bam::AlignWrapper - Add high-level methods to Bio::DB::Bam::Alignment
This is a wrapper around Bio::DB::Bam::Alignment that adds the following high-level methods. These are described in detail in "High-level Bio::DB::Bam::Alignment methods" in Bio::DB::Bam::Alignment. add_segment() add a new subfeature to split alignme...
LDS/Bio-SamTools-1.43 - 12 Feb 2016 19:33:32 UTC
Bio::DB::Sam - Read SAM/BAM database files
This module provides a Perl interface to the libbam library for indexed and unindexed SAM/BAM sequence alignment databases. It provides support for retrieving information on individual alignments, read pairs, and alignment coverage information across...
LDS/Bio-SamTools-1.43 - 12 Feb 2016 19:33:32 UTC
Bio::DB::Bam::Query - Object representing the query portion of a BAM/SAM alignment
This is a simple Bio::SeqFeatureI object that represents the query part of a SAM alignment. Methods POD ERRORS Hey! The above document had some coding errors, which are explained below: Around line 8: =over is the last thing in the document?!...
LDS/Bio-SamTools-1.43 - 12 Feb 2016 19:33:32 UTC
Bio::DB::Bam::Alignment - The SAM/BAM alignment object
The Bio::DB::Bam::Alignment and Bio::DB::Bam::AlignWrapper classes together represent an alignment between a sequence read (the "query") and a reference sequence (the "target"). Bio::DB::Bam::Alignment adheres strictly to the C-level BAM library's de...
LDS/Bio-SamTools-1.43 - 12 Feb 2016 19:33:32 UTC