Search results for "dist:Bio-ToolBox Bio::Map::Position"
bam2wig.pl - A program to convert Bam alignments into a wig representation file.
This program will enumerate aligned sequence tags and generate a wig, or optionally BigWig, file. Alignments may be counted and recorded in several different ways. Strict enumeration may be performed and recorded at either the alignment's start or mi...
TJPARNELL/Bio-ToolBox-1.691 - 13 Oct 2022 18:07:52 UTC
Bio::ToolBox::parser::gff - parse GFF3, GTF, and GFF files
This module parses a GFF file into SeqFeature objects. It natively handles GFF3, GTF, and general GFF files. For both GFF3 and GTF files, fully nested gene models, typically gene => transcript => (exon, CDS, etc), may be built using the appropriate a...
TJPARNELL/Bio-ToolBox-1.691 - 13 Oct 2022 18:07:52 UTC
get_relative_data.pl - A program to collect data in bins around a relative position.
This program will collect data around a relative coordinate of a genomic feature or region. The data is collected in a series of windows flanking the feature start (5' position for stranded features), end (3' position), or the midpoint position. The ...
TJPARNELL/Bio-ToolBox-1.691 - 13 Oct 2022 18:07:52 UTC