Search results for "dist:Bio-ViennaNGS SPLICE"
Bio::ViennaNGS::SpliceJunc - Perl extension for alternative splicing analysis
Bio::ViennaNGS::SpliceJunc is a Perl module for alternative splicing (AS) analysis. It provides routines for identification, characterization and visualization of novel and existing (annotated) splice junctions from RNA-seq data. Identification of no...
MTW/Bio-ViennaNGS-v0.19.2 - 11 Dec 2018 13:25:00 UTC
splice_site_summary.pl - Find novel splice junctions in RNA-seq data.
This program identifies and characterizes splice sites from mapped RNA-seq data against annotated splice junctions....
MTW/Bio-ViennaNGS-v0.19.2 - 11 Dec 2018 13:25:00 UTC
Bio::ViennaNGS - A Perl distribution for Next-Generation Sequencing (NGS) data analysis
Bio::ViennaNGS is a distribution of Perl modules and utilities for building efficient Next-Generation Sequencing (NGS) analysis pipelines. It covers various aspects of NGS data analysis, including (but not limited to) conversion of sequence annotatio...
MTW/Bio-ViennaNGS-v0.19.2 - 11 Dec 2018 13:25:00 UTC
sj_visualizer.pl - Produce BED12 from BED6 splice junction files.
Convert splice junctions from mapped RNA-seq data to BED12 format for easy genome browser visualization. The program expects BED6 input in segemehl splice junction format (see the segemehl documentation <http://www.bioinf.uni-leipzig.de/Software/sege...
MTW/Bio-ViennaNGS-v0.19.2 - 11 Dec 2018 13:25:00 UTC
gff2bed.pl - Convert (non-spliced) GFF3 to BED12
Convert feature annotation of non-spliced organisms in GFF3 format to BED12. A separate BED12 file will be created for each genomic feature type (eg CDS, tRNA, rRNA, ncRNA, etc.). This script serves as a reference implementation of code fragments fro...
MTW/Bio-ViennaNGS-v0.19.2 - 11 Dec 2018 13:25:00 UTC