Search results for "dist:BioPerl Bio::Factory::SequenceStreamI"
Bio::Factory::SequenceStreamI - Interface describing the basics of a Sequence Stream.
This interface is for describing objects which produces Bio::PrimarySeqI objects or processes Bio::PrimarySeqI objects to a data stream....
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC
Bio::Seq::BaseSeqProcessor - Base implementation for a SequenceProcessor
This provides just a basic framework for implementations of Bio::Factory::SequenceProcessorI. Essentially what it does is support a parameter to new() to set sequence factory and source stream, and a next_seq() implementation that will use a queue to...
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC
Bio::Factory::SequenceProcessorI - Interface for chained sequence processing algorithms
This defines an interface that allows seamless chaining of sequence processing algorithms encapsulated in modules while retaining the overall Bio::SeqIO interface at the end of the pipeline. This is especially useful if you want an easily configurabl...
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC
Bio::AlignIO::Handler::GenericAlignHandler - Bio::HandlerI-based generic data handler class for alignment-based data
This is an experimental implementation of a alignment-based HandlerBaseI parser and may change over time. It is possible that the way handler methods are set up will change over development to allow more flexibility. Standard Developer caveats: Here ...
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC
Bio::SeqIO::Handler::GenericRichSeqHandler - Bio::HandlerI-based data handler for GenBank/EMBL/UniProt (and other) sequence data
This is an experimental implementation of a sequence-based HandlerBaseI parser and may change over time. It is possible (nay, likely) that the way handler methods are set up will change over development to allow more flexibility. Release pumpkins, pl...
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC