Search results for "dist:BioPerl Bio::SearchIO::Writer"
Bio::SearchIO::Writer::GbrowseGFF - Interface for outputting parsed search results in Gbrowse GFF format
This writer produces Gbrowse flavour GFF from a Search::Result object....
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC
Bio::SearchIO::Writer::HSPTableWriter - Tab-delimited data for Bio::Search::HSP::HSPI objects
Bio::SearchIO::Writer::HSPTableWriter generates output at the finest level of granularity for data within a search result. Data for each HSP within each hit in a search result is output in tab-delimited format, one row per HSP. Available Columns Here...
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC
Bio::SearchIO::Writer::HitTableWriter - Tab-delimited data for Bio::Search::Hit::HitI objects
Bio::SearchIO::Writer::HitTableWriter outputs summary data for each Hit within a search result. Output is in tab-delimited format, one row per Hit. The reason why this is considered summary data is that if a hit contains multiple HSPs, the HSPs will ...
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC
Bio::SearchIO::Writer::TextResultWriter - Object to implement writing a Bio::Search::ResultI in Text.
This object implements the SearchWriterI interface which will produce a set of Text for a specific Bio::Search::Report::ReportI interface. You can also provide the argument -filters => \%hash to filter the at the hsp, hit, or result level. %hash is a...
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC
Bio::SearchIO::Writer::HTMLResultWriter - write a Bio::Search::ResultI in HTML
This object implements the SearchWriterI interface which will produce a set of HTML for a specific Bio::Search::Report::ReportI interface. See Bio::SearchIO::SearchWriterI for more info on the filter method....
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC
Bio::SearchIO::Writer::ResultTableWriter - Outputs tab-delimited data for each Bio::Search::Result::ResultI object.
Bio::SearchIO::Writer::ResultTableWriter outputs data in tab-delimited format for each search result, one row per search result. This is a very coarse-grain level of information since it only includes data stored in the Bio::Search::Result::ResultI o...
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC
Bio::SearchIO::SearchWriterI - Interface for outputting parsed Search results
This module defines abstract methods that all subclasses must implement to be used for outputting results from Bio::Search::Result::ResultI objects....
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC
Bio::SearchIO - Driver for parsing Sequence Database Searches (BLAST, FASTA, ...)
This is a driver for instantiating a parser for report files from sequence database searches. This object serves as a wrapper for the format parsers in Bio::SearchIO::* - you should not need to ever use those format parsers directly. (For people used...
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC