Search results for "dist:BioPerl JUGUANG"
Bio::Taxon - A node in a represented taxonomy
This is the next generation (for Bioperl) of representing Taxonomy information. Previously all information was managed by a single object called Bio::Species. This new implementation allows representation of the intermediate nodes not just the specie...
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC
Bio::Root::RootI - base interface for all BioPerl classes
This is just a set of methods which do not assume anything about the object they are on. The methods provide the ability to throw exceptions with nice stack traces. This is what should be inherited by all Bioperl compliant interfaces, even if they ar...
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC
Bio::Tools::Prints - Parser for FingerPRINTScanII program
PRINTScan II is a PRINTS fingerprint identification algorithm. Copyright (C) 1998,1999 Phil Scordis...
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC
Bio::Tools::PrositeScan - Parser for ps_scan result
This is a parser of the output of the ps_scan program. It takes either a file handle or a file name, and returns a Bio::SeqFeature::FeaturePair object. Note that the current implementation parses the entire file at once....
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC
Bio::OntologyIO::Handlers::BaseSAXHandler - base class for SAX Handlers
This module is an abstract module, serving as the base of any SAX Handler implementation. It tries to offer the framework that SAX handlers generally need, such as tag_stack, char_store, etc. In the implementation handler, you can take advantage of t...
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC
Bio::OntologyIO::Handlers::InterProHandler - XML handler class for InterProParser
Handles xml events generated by InterProParser when parsing InterPro XML files....
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC
Bio::OntologyIO::Handlers::InterPro_BioSQL_Handler - parse an InterPro XML file and persist the resulting terms to a Biosql database
This module is for parsing an InterPro XML file and persist the resulting terms to a Biosql database as soon as the term is complete as signaled by the appropriate xml tag. This parser takes advantage of SAX, a stream-based XML parser technology, to ...
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC