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Search results for "dist:BioPerl dist::bioperl"

Bio::Matrix::PhylipDist - A Phylip Distance Matrix object River stage two • 60 direct dependents • 65 total dependents

Simple object for holding Distance Matrices generated by the following Phylip programs: 1) dnadist 2) protdist 3) restdist It currently handles parsing of the matrix without the data output option. 5 Alpha 0.00000 4.23419 3.63330 6.20865 3.45431 Beta...

CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC

Bio::Tools::RandomDistFunctions - A set of routines useful for generating random data in different distributions River stage two • 60 direct dependents • 65 total dependents

Most of the code is based on the C implementation of these routines in Mike Sanderson's r8s's package. See http://loco.biosci.arizona.edu/r8s/ for information on his software....

CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC

Bio::Tools::Phylo::Phylip::ProtDist - parser for ProtDist output River stage two • 60 direct dependents • 65 total dependents

A parser for ProtDist output into a Bio::Matrix::PhylipDist object. See also Bio::Matrix::IO::phylip this module may go away....

CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC

Bio::Root::Utilities - general-purpose utilities River stage two • 60 direct dependents • 65 total dependents

Provides general-purpose utilities of potential interest to any Perl script. The ":obj" tag is a convenience that imports a $Util symbol into your namespace representing a Bio::Root::Utilities object. This saves you from creating your own Bio::Root::...

CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC
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