Search results for "dist:BioPerl-Run CJFIELDS"
Bio::Tools::Run::ERPIN - Wrapper for local execution of the ERPIN suite of programs.
CJFIELDS/BioPerl-Run-1.007003
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08 Feb 2019 19:55:33 UTC
Bio::Tools::Run::RNAMotif - Wrapper for local execution of rnamotif, rm2ct, rmfmt, rmprune
Wrapper module for Tom Macke and David Cases's RNAMotif suite of programs. This allows running of rnamotif, rmprune, rm2ct, and rmfmt. Binaries are available at http://www.scripps.edu/mb/case/casegr-sh-3.5.html. This wrapper allows for one to save ou...
CJFIELDS/BioPerl-Run-1.007003 - 08 Feb 2019 19:55:33 UTC
Bio::Tools::Run::Infernal - Wrapper for local execution of cmalign, cmbuild, cmsearch, cmscore
Wrapper module for Sean Eddy's Infernal suite of programs. The current implementation runs cmsearch, cmcalibrate, cmalign, cmemit, cmbuild, cmscore, and cmstat. cmsearch will return a Bio::SearchIO, cmemit a Bio::SeqIO/AlignIO, and cmalign a Bio::Ali...
CJFIELDS/BioPerl-Run-1.007003 - 08 Feb 2019 19:55:33 UTC
Bio::Tools::Run::Alignment::Blat
Wrapper module for Blat program. This newer version allows for all parameters to be set by passing them as an option to new(). Key bits not implemented yet (TODO): * Implement all needed Bio::Tools::Run::WrapperBase methods Missing are a few, includi...
CJFIELDS/BioPerl-Run-1.007003 - 08 Feb 2019 19:55:33 UTC