Search results for "dist:FAST Bio::SearchIO::megablast"
FAST::Bio::SearchIO::megablast - a driver module for FAST::Bio::SearchIO to parse megablast reports (format 0)
Beware! Because of the way megablast report format 0 is coded, realize that score means # gap characters + # mismatches for a HSP. The docs from NCBI regarding FORMAT 0 # 0: Produce one-line output for each alignment, in the form # # 'subject-id'=='[...
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC
FAST::Bio::SearchIO - Driver for parsing Sequence Database Searches (BLAST, FASTA, ...)
This is a driver for instantiating a parser for report files from sequence database searches. This object serves as a wrapper for the format parsers in FAST::Bio::SearchIO::* - you should not need to ever use those format parsers directly. (For peopl...
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC
FAST::Bio::SearchIO::gmap_f9 - Event generator for parsing gmap reports (Z format)
This object encapsulated the necessary methods for generating events suitable for building FAST::Bio::Search objects from a GMAP "compressed" report (from gmap run with -Z flag) Read the FAST::Bio::SearchIO for more information about how to use this....
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC