Search results for "dist:FAST Bio::SeqIO::swiss"
FAST::Bio::SeqIO::swiss - Swissprot sequence input/output stream
This object can transform FAST::Bio::Seq objects to and from Swiss-Pprot flat file databases. There is a lot of flexibility here about how to dump things which needs to be documented. GN (Gene name) line management details A Uniprot/Swiss-Prot entry ...
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC
FAST::Bio::SeqIO - Handler for SeqIO Formats
FAST::Bio::SeqIO is a handler module for the formats in the SeqIO set (eg, FAST::Bio::SeqIO::fasta). It is the officially sanctioned way of getting at the format objects, which most people should use. The FAST::Bio::SeqIO system can be thought of lik...
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC
FAST::Bio::Seq - Sequence object, with features
A Seq object is a sequence with sequence features placed on it. The Seq object contains a PrimarySeq object for the actual sequence and also implements its interface. In Bioperl we have 3 main players that people are going to use frequently FAST::Bio...
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC
FAST::Bio::SeqIO::FTHelper - Helper class for Embl/Genbank feature tables
Represents one particular Feature with the following fields key - the key of the feature loc - the location string of the feature <other fields> - other fields...
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC
FAST::Bio::SeqIO::swissdriver - SwissProt/UniProt handler-based push parser
This object can transform FAST::Bio::Seq objects to and from UniProt flat file databases. The key difference between this parser and the tried-and-true FAST::Bio::SeqIO::swiss parser is this version separates the parsing and data manipulation into a ...
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC
FAST::Bio::Tools::GuessSeqFormat - Module for determining the sequence format of the contents of a file, a string, or through a filehandle.
FAST::Bio::Tools::GuessSeqFormat tries to guess the format ("swiss", "pir", "fasta" etc.) of the sequence or MSA in a file, in a scalar, or through a filehandle. The guess() method of a FAST::Bio::Tools::GuessSeqFormat object will examine the data, l...
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC
FAST::Bio::Cluster::SequenceFamily - Sequence Family object
This is a simple Family object that may hold any group of object. For more specific families, one should derive from FamilyI....
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC