Search results for "dist:FAST Bio::TreeIO"
FAST::Bio::Tree::Tree - An Implementation of TreeI interface.
This object holds handles to Nodes which make up a tree....
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC
FAST::Bio::Tree::TreeI - A Tree object suitable for lots of things, designed originally for Phylogenetic Trees.
This object holds a pointer to the Root of a Tree which is a FAST::Bio::Tree::NodeI....
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC
FAST::Bio::Tree::NodeI - Interface describing a Tree Node
A NodeI is capable of the basic structure of building a tree and storing the branch length between nodes. The branch length is the length of the branch between the node and its ancestor, thus a root node in a Tree will not typically have a valid bran...
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC
FAST::Bio::SeqIO::nexml - NeXML sequence input/output stream
This object can transform FAST::Bio::Seq objects to and from NeXML format. For more information on the NeXML standard, visit <http://www.nexml.org>....
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC
FAST::Bio::AlignIO::nexml - NeXML format sequence alignment input/output stream driver
This object can transform FAST::Bio::SimpleAlign objects to and from NeXML format. For more information on NeXML, visit <http://www.nexml.org>....
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC
FAST::Bio::SeqIO::seqxml - SeqXML sequence input/output stream
This object can transform FAST::Bio::Seq objects to and from SeqXML format. For more information on the SeqXML standard, visit <http://www.seqxml.org>. In short, SeqXML is a lightweight sequence format that takes advantage of the validation capabilit...
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC
FAST::Bio::Tree::TreeFunctionsI - Decorated Interface implementing basic Tree exploration methods
This interface provides a set of implementated Tree functions which only use the defined methods in the TreeI or NodeI interface....
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC