Search results for "dist:go-perl ROOT"
GO::Model::Root
base class for all GO::Model objects...
CMUNGALL/go-perl-0.15 - 12 Jun 2013 16:22:41 UTC
go-show-paths-to-root.pl - shows all possible paths from a term to the top
traverses DAG showing all paths (terms and intervening relationships) to the root This script is purely file based; it needs to parse the ontology each time Subsequent parses can be speeded up using the use_cache option If you wish to use the GO MySQ...
CMUNGALL/go-perl-0.15 - 12 Jun 2013 16:22:41 UTC
go-perl - perl modules for GO and other OBO ontologies
go-perl is part of the go-dev code distribution. It is also available as a seperate library in its own right. go-perl is a collection of perl modules for working with ontologies and data, in particular the Gene Ontology and other Open Bio-Ontologies....
CMUNGALL/go-perl-0.15 - 12 Jun 2013 16:22:41 UTC
GO::Parser - parses all GO files formats and types
Module for parsing GO flat files; for examples of GO/OBO flatfile formats see: <ftp://ftp.geneontology.org/pub/go/ontology> <ftp://ftp.geneontology.org/pub/go/gene-associations> For a description of the various file formats, see: <http://www.geneonto...
CMUNGALL/go-perl-0.15 - 12 Jun 2013 16:22:41 UTC
GO::Model::Graph - a collection of relationships over terms
Object containing Nodes (GO::Model::Term objects) and relationships (:<GO::Model::Relationship> objects) this may be either the whole ontology tree, or a subgraph, depending on how the object is instantiated. ONTOLOGY GRAPH MODEL relationships can be...
CMUNGALL/go-perl-0.15 - 12 Jun 2013 16:22:41 UTC
map2slim - maps gene associations to a 'slim' ontology
Given a GO slim file, and a current ontology (in one or more files), this script will map a gene association file (containing annotations to the full GO) to the terms in the GO slim. The script can be used to either create a new gene association file...
CMUNGALL/go-perl-0.15 - 12 Jun 2013 16:22:41 UTC
go2fmt.pl
parses any GO/OBO style ontology file and writes out as a different format ARGUMENTS -e ERRFILE writes parse errors in XML - defaults to STDERR (there should be no parse errors in well formed files) -p FORMAT determines which parser to use; if left u...
CMUNGALL/go-perl-0.15 - 12 Jun 2013 16:22:41 UTC