Search results for "distribution:Bio-Palantir GENE"
Bio::Palantir::Parser::Gene - BiosynML DTD-derived internal class
# TODO...
LMEUNIER/Bio-Palantir-0.211420 - 22 May 2021 20:37:07 UTC
Bio::Palantir::Refiner::GenePlus - Refiner internal class for handling GenePlus objects
# TODO...
LMEUNIER/Bio-Palantir-0.211420 - 22 May 2021 20:37:07 UTC
Bio::Palantir::Explorer::GeneFasta - Explorer internal class for handling GeneFasta objects
# TODO...
LMEUNIER/Bio-Palantir-0.211420 - 22 May 2021 20:37:07 UTC
Bio::Palantir - core classes and utilities for Bio::Palantir
This distribution is the base of the "Bio::Palantir" module collection designed as a toolbox for handling the post-processing of antiSMASH report data (<https://antismash.secondarymetabolites.org>) and improving in some aspects its annotation of NRPS...
LMEUNIER/Bio-Palantir-0.211420 - 22 May 2021 20:37:07 UTC
Bio::Palantir::Parser - front-end class for Bio::Palantir::Parser module, wich handles the parsing of biosynML.xml and regions.js antiSMASH reports
This module implements classes and their methods for parsing antisMASH reports. The supported report formats are the biosynML.xml file generated in antiSMASH v3-4 (though the version 4 needs to be explicitely activated in the options) or the regions....
LMEUNIER/Bio-Palantir-0.211420 - 22 May 2021 20:37:07 UTC
Bio::Palantir::Roles::Geneable - Geneable Moose role for Gene and GenePlus objects
# TODO...
LMEUNIER/Bio-Palantir-0.211420 - 22 May 2021 20:37:07 UTC
Bio::Palantir::Refiner - front-end class for Bio::Palantir::Refiner module, wich handles the refinement of NRPS/PKS BGC annotations
This module implements classes and their methods for improving the antisMASH annotation of NRPS/PKS BGCs. The refined Biosynthetic Gene Cluster (BGC) information is hierarchically organized as follows: "ClusterPlus.pm": contains attributes and method...
LMEUNIER/Bio-Palantir-0.211420 - 22 May 2021 20:37:07 UTC
Bio::Palantir::Explorer - front-end class for Bio::Palantir::Explorer module, wich handles the NRPS/PKS domain exploration without pre-existing consensus architecture
This module implements classes and their methods for exploring NRPS/PKS domain architecture without any previous consensus imposed. Note that this application mode is only based on the expertise of the user. The input used by "Palantir::Refiner" is t...
LMEUNIER/Bio-Palantir-0.211420 - 22 May 2021 20:37:07 UTC
Bio::Palantir::Parser::Root - BiosynML DTD-derived internal class
# TODO...
LMEUNIER/Bio-Palantir-0.211420 - 22 May 2021 20:37:07 UTC
Bio::Palantir::Parser::Motif - BiosynML DTD-derived internal class
# TODO...
LMEUNIER/Bio-Palantir-0.211420 - 22 May 2021 20:37:07 UTC
Bio::Palantir::Parser::Cluster - BiosynML DTD-derived internal class
# TODO...
LMEUNIER/Bio-Palantir-0.211420 - 22 May 2021 20:37:07 UTC
Bio::Palantir::Refiner::ClusterPlus - Refiner internal class for handling ClusterPlus objects
# TODO...
LMEUNIER/Bio-Palantir-0.211420 - 22 May 2021 20:37:07 UTC
draw_bgc_maps.pl - This script draws NRPS/PKS BGC clusters maps in PNG
LMEUNIER/Bio-Palantir-0.211420
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22 May 2021 20:37:07 UTC
explore_bgc_domains.pl - Reports all detected domain signatures for a NRPS/PKS gene cluster
LMEUNIER/Bio-Palantir-0.211420
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22 May 2021 20:37:07 UTC
Bio::Palantir::Explorer::ClusterFasta - Explorer internal class for handling ClusterFasta objects
# TODO...
LMEUNIER/Bio-Palantir-0.211420 - 22 May 2021 20:37:07 UTC