Search results for "distribution:GOBO GENE"
GOBO::Gene
An GOBO::Node that corresponds to a specific SO:gene In GO, genes are the subject of GOBO::Annotation statements TBD This should really be in bioperl. Modeled as nodes as they can be elements in a graph. cf Chado...
CMUNGALL/GOBO-0.03 - 17 Aug 2009 18:03:10 UTC
GOBO::Annotation
An GOBO::LinkStatement that has GOBO::Evidence attached Annotations need not be stored in the main ontology GOBO::Graph, but this is possible Use in GO In GO, annotations are also thought of as associations between genes and GOBO::TermNode objects. T...
CMUNGALL/GOBO-0.03 - 17 Aug 2009 18:03:10 UTC
GOBO::Phylo::PhyloNode
An GOBO::Node in a phylogenetic tree that represents some kind of evolvable entity Note that the same entity (e.g. gene, species) can be present in multiple GOBO::Phylo::PhyloTree. It may have different parents in each. This necessitates having a sep...
CMUNGALL/GOBO-0.03 - 17 Aug 2009 18:03:10 UTC
go-gaf-summarize.pl
Extracts all annotations to a term, including annotations inferred from graph...
CMUNGALL/GOBO-0.03 - 17 Aug 2009 18:03:10 UTC
go-gaf-inference.pl
Performs inference upon a GAF (Gene Association File), generating ICs based on configurable criteria INFERENCE Pass in --infer on the command line Inter-ontology part_of inference Example: go-gaf-inference.pl --infer --per-file go/ontology/obo_format...
CMUNGALL/GOBO-0.03 - 17 Aug 2009 18:03:10 UTC
GOBO::InferenceEngine::GAFInferenceEngine
An GOBO::InferenceEngine for making inferences over a GAF (Gene Association File). Rules...
CMUNGALL/GOBO-0.03 - 17 Aug 2009 18:03:10 UTC