Search results for "distribution:Bio-FeatureIO ALLENDAY"
Bio::FeatureIO - Handler for FeatureIO
An I/O iterator subsystem for genomic sequence features. Bio::FeatureIO is a handler module for the formats in the FeatureIO set (eg, Bio::FeatureIO::GFF). It is the officially sanctioned way of getting at the format objects, which most people should...
CJFIELDS/Bio-FeatureIO-1.6.905 - 05 Sep 2014 17:34:58 UTC
Bio::FeatureIO::gtf - read write features in GTF format
GTF, is also known as GFF v2.5. This class is simply a subclass of Bio::FeatureIO::gff that initializes with -version => 2.5....
CJFIELDS/Bio-FeatureIO-1.6.905 - 05 Sep 2014 17:34:58 UTC
Bio::FeatureIO::bed - read/write features from UCSC BED format
See <http://www.genome.ucsc.edu/goldenPath/help/customTrack.html#BED>. Currently for read and write only the first 6 fields (chr, start, end, name, score, strand) are supported....
CJFIELDS/Bio-FeatureIO-1.6.905 - 05 Sep 2014 17:34:58 UTC
Bio::FeatureIO::gff - read/write GFF feature files
Currently implemented: version read? write? ------------------------------ GFF 1 N N GFF 2 N N GFF 2.5 (GTF) N Y GFF 3 Y Y...
CJFIELDS/Bio-FeatureIO-1.6.905 - 05 Sep 2014 17:34:58 UTC
Bio::FeatureIO::interpro - read features from InterPro XML
See <http://www.ebi.ac.uk/interpro/documentation.html>....
CJFIELDS/Bio-FeatureIO-1.6.905 - 05 Sep 2014 17:34:58 UTC
Bio::SeqFeature::Annotated - PLEASE PUT SOMETHING HERE
None yet, complain to authors....
CJFIELDS/Bio-FeatureIO-1.6.905 - 05 Sep 2014 17:34:58 UTC