Search results for "distribution:Bio-HTS Bio::*"
Bio::HTS - XS module providing an interface to htslib
The beginnings of an XS wrapper around the many useful methods in htslib. All the other perl modules use the old samtools or aren't on cpan. So far only Tabix is supported. Contributions welcome on github: <http://www.github.com/congenica/perl_htslib...
NYET/Bio-HTS-v0.0.1 - 11 Jan 2016 11:58:54 UTC
Bio::HTS::VCF - start of an interface to the bcf/vcf utilities in htslib
NYET/Bio-HTS-v0.0.1
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11 Jan 2016 11:58:54 UTC
Bio::HTS::File - XS module providing an interface to c htsFile structs
By itself this module is pretty useless, you'll probably use it with other modules under HTS (currently only Tabix exists) Methods "hts_open" Returns a pointer to the htsFile C struct. You must call hts_close before the returned pointer goes out of s...
NYET/Bio-HTS-v0.0.1 - 11 Jan 2016 11:58:54 UTC
Bio::HTS::Tabix - Object oriented access to the underlying tbx C methods
A high level object oriented interface to the htslib tabix (tbx.h) api. Currently it only supports retrieving regions from a tabixed file, because that's all I needed it for. Attributes "filename" The gzipped file you want to query. Must have a filen...
NYET/Bio-HTS-v0.0.1 - 11 Jan 2016 11:58:54 UTC
Bio::HTS::Tabix::Iterator - XS module wrapping around a tabix hts_itr_t
This is returned from Bio::HTS::Tabix, the only method you need to care about is 'next'. Don't go importing this and calling new on it if you value your sanity, it won't work. Methods "next" Returns a string with the line from the tabix iterator...
NYET/Bio-HTS-v0.0.1 - 11 Jan 2016 11:58:54 UTC