Bio::MUST::Core::Taxonomy - NCBI Taxonomy one-stop shop

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# TODO...

DBAURAIN/Bio-MUST-Core-0.240390 - 08 Feb 2024 21:02:36 UTC

Bio::MUST::Core::Taxonomy::Filter - Helper class for filtering seqs according to taxonomy

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# TODO...

DBAURAIN/Bio-MUST-Core-0.240390 - 08 Feb 2024 21:02:36 UTC

Bio::MUST::Core::Taxonomy::Labeler - Helper class for simple labeler based on taxonomy

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# TODO...

DBAURAIN/Bio-MUST-Core-0.240390 - 08 Feb 2024 21:02:36 UTC

Bio::MUST::Core::Taxonomy::Category - Helper class for multiple-criterion classifier based on taxonomy

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# TODO...

DBAURAIN/Bio-MUST-Core-0.240390 - 08 Feb 2024 21:02:36 UTC

Bio::MUST::Core::Taxonomy::Criterion - Helper class for multiple-criterion classifier based on taxonomy

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# TODO...

DBAURAIN/Bio-MUST-Core-0.240390 - 08 Feb 2024 21:02:36 UTC

Bio::MUST::Core::Taxonomy::MooseNCBI - Wrapper class for serializing Bio::LITE::Taxonomy::NCBI object

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# TODO...

DBAURAIN/Bio-MUST-Core-0.240390 - 08 Feb 2024 21:02:36 UTC

Bio::MUST::Core::Taxonomy::Classifier - Helper class for multiple-criterion classifier based on taxonomy

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# TODO...

DBAURAIN/Bio-MUST-Core-0.240390 - 08 Feb 2024 21:02:36 UTC

Bio::MUST::Core::Taxonomy::ColorScheme - Helper class providing color scheme for taxonomic annotations

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# TODO...

DBAURAIN/Bio-MUST-Core-0.240390 - 08 Feb 2024 21:02:36 UTC

Bio::MUST::Core - Core classes and utilities for Bio::MUST

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This distribution is the base of the "Bio::MUST" module collection designed for writing phylogenomic applications in Perl. Their main strength lies in their transparent handling of the NCBI Taxonomy database (see <https://www.ncbi.nlm.nih.gov/taxonom...

DBAURAIN/Bio-MUST-Core-0.240390 - 08 Feb 2024 21:02:36 UTC

fetch-tax.pl - Fetch (and format) information from the NCBI Taxonomy database

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DBAURAIN/Bio-MUST-Core-0.240390 - 08 Feb 2024 21:02:36 UTC

list2mapper.pl - Build final id mapper from id list using the NCBI Taxonomy database

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DBAURAIN/Bio-MUST-Core-0.240390 - 08 Feb 2024 21:02:36 UTC

Bio::MUST::Core::Roles::Taxable - Taxable Moose role for objects that query a taxonomy

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# TODO...

DBAURAIN/Bio-MUST-Core-0.240390 - 08 Feb 2024 21:02:36 UTC

setup-taxdir.pl - Setup a local mirror of the NCBI Taxonomy (or GTDB) database

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DBAURAIN/Bio-MUST-Core-0.240390 - 08 Feb 2024 21:02:36 UTC

tab2mapper.pl - Build an id mapper from a tabular file giving annotation strings

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DBAURAIN/Bio-MUST-Core-0.240390 - 08 Feb 2024 21:02:36 UTC

format-tree.pl - Format (and annotate) trees for printing

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DBAURAIN/Bio-MUST-Core-0.240390 - 08 Feb 2024 21:02:36 UTC

tax-mask-ali.pl - Mask ALI files based on taxonomic filters

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DBAURAIN/Bio-MUST-Core-0.240390 - 08 Feb 2024 21:02:36 UTC

classify-ali.pl - Classify ALI files based on taxonomic filters

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DBAURAIN/Bio-MUST-Core-0.240390 - 08 Feb 2024 21:02:36 UTC

tax-filter-ali.pl - Apply a taxonomic filter to ALI files

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DBAURAIN/Bio-MUST-Core-0.240390 - 08 Feb 2024 21:02:36 UTC

inst-tax-filter.pl - Apply a taxonomic filter to a (UniProt) FASTA database (optimized)

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DBAURAIN/Bio-MUST-Core-0.240390 - 08 Feb 2024 21:02:36 UTC