Search results for "distribution:Bio-Tools-Primer3Redux CJFIELDS"
Bio::Tools::Primer3Redux
Bio::Tools::Primer3Redux creates the input files needed to design primers using primer3 and provides mechanisms to access data in the primer3 output files. This module provides a bioperl interface to the program primer3. See http://www-genome.wi.mit....
CJFIELDS/Bio-Tools-Primer3Redux-0.09 - 11 Jun 2011 04:03:42 UTC
Bio::Tools::Run::Primer3Redux
Bio::Tools::Run::Primer3Redux creates the input files needed to design primers using primer3 and provides mechanisms to access data in the primer3 output files. This module a refactoring of the original BioPerl primer3 tools, themselves a refactoring...
CJFIELDS/Bio-Tools-Primer3Redux-0.09 - 11 Jun 2011 04:03:42 UTC
Bio::Tools::Primer3Redux::Primer
This class is a simple subclass of Bio::SeqFeature::Generic that adds convenience accessor methods for primer-specific data, such as Tm, GC content, and other interesting bits of information returned from Primer3. Beyond that, the data can be persist...
CJFIELDS/Bio-Tools-Primer3Redux-0.09 - 11 Jun 2011 04:03:42 UTC
Bio::Tools::Primer3Redux::Result
This is a simple holder class for Primer3 sequence results. The sequence used by default is the one returned in the Primer3 results, but one can pass in a (more-SeqFeature/Annotation-rich) version as a Bio::Seq using attach_seq() (see below for more ...
CJFIELDS/Bio-Tools-Primer3Redux-0.09 - 11 Jun 2011 04:03:42 UTC
Bio::Tools::Primer3Redux::PrimerPair
Bio::Tools::Primer3Redux::PrimerPair acts as a simple SeqFeature that bundles primer pair data together into one object. This object can be used to retrieve the amplicon sequence, the forward/reversion (left/right) primers, and any internal oligos. F...
CJFIELDS/Bio-Tools-Primer3Redux-0.09 - 11 Jun 2011 04:03:42 UTC