Search results for "distribution:BioPerl Bio::Factory::ObjectFactory"
Bio::Factory::ObjectFactory - Instantiates a new Bio::Root::RootI (or derived class) through a factory
This object will build Bio::Root::RootI objects generically....
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC
Bio::Factory::ObjectFactoryI - A General object creator factory
This interface is the basic structure for a factory which creates new objects. In this case it is up to the implementer to check arguments and initialize whatever new object the implementing class is designed for....
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC
Bio::Factory::ObjectBuilderI - Interface for an object builder
An object builder is different from an object factory in that it accumulates information for the object and finally, or constantly, depending on the implementation, builds the object. It also allows for implementations that can tell the information f...
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC
Bio::SeqFeature::FeaturePair - hold pair feature information e.g. blast hits
A sequence feature object where the feature is itself a feature on another sequence - e.g. a blast hit where residues 1-40 of a protein sequence SW:HBA_HUMAN has hit to bases 100 - 220 on a genomic sequence HS120G22. The genomic sequence coordinates ...
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC
Bio::Ontology::OntologyEngineI - Interface a minimal Ontology implementation should satisfy
This describes the minimal interface an ontology query engine should provide. It intentionally does not make explicit references to the ontology being a DAG, nor does it mandate that the ontology be a vocabulary. Rather, it tries to generically expre...
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC
Bio::OntologyIO::Handlers::InterProHandler - XML handler class for InterProParser
Handles xml events generated by InterProParser when parsing InterPro XML files....
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC