Search results for "distribution:BioPerl Bio::Search::Iteration::IterationI"
Bio::Search::Iteration::IterationI - Abstract interface to an iteration from an iterated search result, such as PSI-BLAST.
Bio::Search::Result::ResultI objects are data structures containing the results from the execution of a search algorithm. As such, it may contain various algorithm specific information as well as details of the execution, but will contain a few funda...
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC
Bio::Search::Iteration::GenericIteration - A generic implementation of the Bio::Search::Iteration::IterationI interface.
This module acts as a container for Bio::Search::Hit::HitI objects, allowing a Search::Result::ResultI object to partition its hits based on which iteration the hit occurred in (e.g., a PSI-BLAST round). Unless you're writing a parser, you won't ever...
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC
Bio::Search::Result::BlastResult - Blast-specific subclass of Bio::Search::Result::GenericResult
This object is a subclass of Bio::Search::Result::GenericResult and provides some operations that facilitate working with BLAST and PSI-BLAST results. For general information about working with Results, see Bio::Search::Result::GenericResult....
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC
Bio::SearchIO::EventHandlerI - An abstract Event Handler for Search Result parsing
This interface describes the basic methods needed to handle Events thrown from parsing a Search Result such as FASTA, BLAST, or HMMer....
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC
Bio::Search::Result::CrossMatchResult - CrossMatch-specific subclass of Bio::Search::Result::GenericResult
This object is a subclass of Bio::Search::Result::GenericResult and provides some operations that facilitate working with CrossMatch and CrossMatch results. For general information about working with Results, see Bio::Search::Result::GenericResult....
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC