Search results for "distribution:BioPerl-DB DBI"
Bio::DB::DBI - DESCRIPTION of Interface
Describe the interface here...
CJFIELDS/BioPerl-DB-1.006900 - 15 Apr 2011 19:35:57 UTC
Bio::DB::DBI::Pg - DESCRIPTION of Object
Describe the object here...
CJFIELDS/BioPerl-DB-1.006900 - 15 Apr 2011 19:35:57 UTC
Bio::DB::DBI::base - base class for drivers implementing Bio::DB::DBI
Don't instantiate this module directly. Instead instantiate one of the derived classes....
CJFIELDS/BioPerl-DB-1.006900 - 15 Apr 2011 19:35:57 UTC
Bio::DB::DBI::mysql - DESCRIPTION of Object
Describe the object here...
CJFIELDS/BioPerl-DB-1.006900 - 15 Apr 2011 19:35:57 UTC
Bio::DB::DBI::Oracle - DESCRIPTION of Object
Describe the object here...
CJFIELDS/BioPerl-DB-1.006900 - 15 Apr 2011 19:35:57 UTC
Bio::DB::DBI::Transaction - DESCRIPTION of Object
Describe the object here...
CJFIELDS/BioPerl-DB-1.006900 - 15 Apr 2011 19:35:57 UTC
Bio::DB::DBI::TransactionListener - a simple transaction listener
This object is the contract and at the same time a simple (neutral) implementation of a transaction listener. Transaction listeners are notified before and after commit and rollback on transactions as represented by a Bio::DB::DBI::Transaction object...
CJFIELDS/BioPerl-DB-1.006900 - 15 Apr 2011 19:35:57 UTC
Bio::DB::DBD - DESCRIPTION of Interface
Describe the interface here...
CJFIELDS/BioPerl-DB-1.006900 - 15 Apr 2011 19:35:57 UTC
Bio::DB::DBContextI - Interface for a class implementing a database context
This object represents the context of a database that is implemented somehow....
CJFIELDS/BioPerl-DB-1.006900 - 15 Apr 2011 19:35:57 UTC
Bio::DB::SimpleDBContext - a base implementation of Bio::DB::DBContextI
See Bio::DB::DBContextI....
CJFIELDS/BioPerl-DB-1.006900 - 15 Apr 2011 19:35:57 UTC
Bio::DB::BioSQL::BaseDriver - DESCRIPTION of Object
Describe the object here...
CJFIELDS/BioPerl-DB-1.006900 - 15 Apr 2011 19:35:57 UTC
Bio::DB::Query::DBQueryResult - DESCRIPTION of Object
This modules provides an implementation of Bio::DB::Query::QueryResultI for database queries through DBI....
CJFIELDS/BioPerl-DB-1.006900 - 15 Apr 2011 19:35:57 UTC
Bio::DB::Query::PrebuiltResult - DESCRIPTION of Object
This modules provides an implementation of Bio::DB::Query::QueryResultI for database queries through DBI....
CJFIELDS/BioPerl-DB-1.006900 - 15 Apr 2011 19:35:57 UTC
load_ontology.pl
This script loads a BioSQL database with an ontology. There are a number of options to do with where the BioSQL database is (ie, hostname, user for database, password, database name) followed by the database name you wish to load this into and then a...
CJFIELDS/BioPerl-DB-1.006900 - 15 Apr 2011 19:35:57 UTC
load_seqdatabase.pl
This script loads a BioSQL database with sequences. There are a number of options that have to do with where the database is and how it's accessed and the format and namespace of the input files. These are followed by any number of file names. The fi...
CJFIELDS/BioPerl-DB-1.006900 - 15 Apr 2011 19:35:57 UTC
Bio::DB::BioSQL::BasePersistenceAdaptor - DESCRIPTION of Object
Describe the object here...
CJFIELDS/BioPerl-DB-1.006900 - 15 Apr 2011 19:35:57 UTC
Bio::DB::BioSQL::Pg::SpeciesAdaptorDriver - DESCRIPTION of Object
This is basically a copy-and-paste job from the mysql-specific file of the very same name....
CJFIELDS/BioPerl-DB-1.006900 - 15 Apr 2011 19:35:57 UTC
Bio::DB::BioSQL::Oracle::TermAdaptorDriver - DESCRIPTION of Object
Describe the object here...
CJFIELDS/BioPerl-DB-1.006900 - 15 Apr 2011 19:35:57 UTC
drop_mysql_biosql_test_dbs
THIS script is for bioperl-db developers to drop all test databases, which may be generated during runing 'make test'. NOTE: This script is only for mysql database, since within my knowledge on DBI, I do not know how to connect to Oracle host without...
CJFIELDS/BioPerl-DB-1.006900 - 15 Apr 2011 19:35:57 UTC