Search results for "distribution:BioPerl-DB JUGUANG"
Bio::DB::EasyArgv
This is a lazy-but-easy way to get the dbcontext arguments. All you need to do is to invoke get_dbcontext_from_argv before using the standard Getopt. The below options will be absorbed and removed from @ARGV. db_file, host, dbname, dbuser, dbpass, dr...
CJFIELDS/BioPerl-DB-1.006900 - 15 Apr 2011 19:35:57 UTC
Bio::DB::DBI::base - base class for drivers implementing Bio::DB::DBI
Don't instantiate this module directly. Instead instantiate one of the derived classes....
CJFIELDS/BioPerl-DB-1.006900 - 15 Apr 2011 19:35:57 UTC
Bio::DB::BioSQL::MultiDB
The scalability issue will arise, when multiple huge bio databases are loaded in a single database in RDBMS, due to the scalability of the RDBMS. So one solution to solve it is simply to distribute them into multiple physical database, while a user e...
CJFIELDS/BioPerl-DB-1.006900 - 15 Apr 2011 19:35:57 UTC
load_ontology.pl
This script loads a BioSQL database with an ontology. There are a number of options to do with where the BioSQL database is (ie, hostname, user for database, password, database name) followed by the database name you wish to load this into and then a...
CJFIELDS/BioPerl-DB-1.006900 - 15 Apr 2011 19:35:57 UTC
drop_mysql_biosql_test_dbs
THIS script is for bioperl-db developers to drop all test databases, which may be generated during runing 'make test'. NOTE: This script is only for mysql database, since within my knowledge on DBI, I do not know how to connect to Oracle host without...
CJFIELDS/BioPerl-DB-1.006900 - 15 Apr 2011 19:35:57 UTC