Search results for "distribution:BioPerl-Network Bio::Network::IO::dip"
Bio::Network::IO::dip_tab - class for parsing interaction data in DIP tab-delimited format
The Database of Interacting Proteins (DIP) is a protein interaction database (see <http://dip.doe-mbi.ucla.edu/dip/Main.cgi>). The species-specific subsets of the DIP database are provided in a simple, tab-delimited format. The tab-separated columns ...
CJFIELDS/BioPerl-Network-1.006902 - 07 Nov 2011 16:27:40 UTC
Bio::Network::IO - Class for reading and writing biological network data.
This class is analagous to the SeqIO and AlignIO classes. To read in a file of a particular format, file and format are given as key/value pairs as arguments. The Bio::Network::IO checks that the appropriate module is available and loads it. At prese...
CJFIELDS/BioPerl-Network-1.006902 - 07 Nov 2011 16:27:40 UTC
Bio::Network::IO::psi25
PSI MI (Protein Standards Initiative Molecular Interaction) XML is a format to describe protein-protein interactions and interaction networks. This module parses version 2.5 of PSI MI. Databases The following databases provide their data as PSI MI XM...
CJFIELDS/BioPerl-Network-1.006902 - 07 Nov 2011 16:27:40 UTC
Bio::Network::IO::psi10
PSI MI (Protein Standards Initiative Molecular Interaction) XML is a format to describe protein-protein interactions and interaction networks. This module parses version 1.0 of PSI MI. Databases The following databases provide their data as PSI MI XM...
CJFIELDS/BioPerl-Network-1.006902 - 07 Nov 2011 16:27:40 UTC
Bio::Network::ProteinNet - a representation of a protein interaction graph.
A ProteinNet is a representation of a protein interaction network. Its functionality comes from the Graph module of Perl and from BioPerl, the nodes or vertices in the network are Sequence objects. Nodes A node is one or more BioPerl sequence objects...
CJFIELDS/BioPerl-Network-1.006902 - 07 Nov 2011 16:27:40 UTC